Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B16
         (205 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0205 - 11639621-11639722,11640096-11640137,11640674-116406...    27   2.8  
10_01_0227 + 2410333-2410367,2410559-2410565,2411106-2411147,241...    26   3.6  
05_07_0018 + 27082661-27083845                                         26   4.8  
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954...    26   4.8  
11_01_0681 - 5568312-5568328,5569057-5569213,5569321-5569482,556...    25   6.4  
01_01_0433 + 3282195-3285185                                           25   8.4  

>11_03_0205 -
           11639621-11639722,11640096-11640137,11640674-11640680,
           11640872-11640900
          Length = 59

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 123 ISNIIKIINTQSHNNKFDDHCSQSKP 46
           I++IIKI+  Q+H  K    C +S+P
Sbjct: 7   ITDIIKIVLIQAHAEKSKVKCQESRP 32


>10_01_0227 +
           2410333-2410367,2410559-2410565,2411106-2411147,
           2411520-2411660
          Length = 74

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 123 ISNIIKIINTQSHNNKFDDHCSQSKP 46
           I++IIKI+  Q+H  K    C +S+P
Sbjct: 9   ITDIIKIVLIQAHAEKSKVKCQESQP 34


>05_07_0018 + 27082661-27083845
          Length = 394

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 88  GLCVNYFNNIRNFEGTGYKFL*SQWNSQQKVKLLNIW 198
           G C     N  +  G  +KF  S WNS Q   L   W
Sbjct: 243 GDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGW 279


>05_03_0194 +
           9547626-9547715,9549235-9549311,9549493-9549564,
           9549648-9549719,9550047-9550118,9550199-9550225,
           9550226-9550297,9550382-9550453,9550897-9550968,
           9551047-9551121,9551226-9551297,9551384-9551449,
           9551544-9551609,9551683-9551727,9551822-9551886,
           9551971-9552350,9552419-9552545,9552688-9552846,
           9552929-9553047,9553182-9553392,9553582-9553762,
           9553845-9553995,9554086-9554448
          Length = 901

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 123 ISNIIKIINTQSHNNKFDDHCSQSKP 46
           ++N+ ++I  QS NN++ D C  S P
Sbjct: 122 MTNLQQMITLQSFNNRYIDSCGFSGP 147


>11_01_0681 -
           5568312-5568328,5569057-5569213,5569321-5569482,
           5569524-5570546
          Length = 452

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 101 LTHNPTIINLTTTAHNQNHLPKQVNAQST 15
           L H+P + NLT   H   H P +V  + +
Sbjct: 379 LRHSPVLENLTLQFHRMGHGPDRVEMKGS 407


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 193 YSGVLPSAVSSIAIIKTCNLFLRNF 119
           +SG +PS++S++  +K  +L   NF
Sbjct: 333 FSGYIPSSISNLTDLKELSLSANNF 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,071,641
Number of Sequences: 37544
Number of extensions: 71539
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)