Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B16
         (205 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   1.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   2.6  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    19   5.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   7.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 1.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 98  THNPTIINLTTT 63
           TH PT  NLT T
Sbjct: 880 THRPTFANLTQT 891


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 79  IIVGLCVNYFNNIRNFEGTGYK 144
           II  LC+   N+I+N E  GY+
Sbjct: 212 IICALCLA--NSIKNAERRGYR 231


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 100 NYFNNIRNFEGTGYKFL 150
           N +NN  N   T YK L
Sbjct: 96  NNYNNYNNNYNTNYKKL 112


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 123 ISNIIKIINTQSHNNKFDDH 64
           +SN  K  N  ++NN ++++
Sbjct: 318 LSNNYKYSNYNNYNNNYNNY 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,821
Number of Sequences: 438
Number of extensions: 764
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2785926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)