Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B15
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    40   4e-05
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    40   6e-05
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   2.4  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    23   5.5  
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch...    23   7.2  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    22   9.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    22   9.6  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 39.9 bits (89), Expect = 4e-05
 Identities = 23/40 (57%), Positives = 26/40 (65%)
 Frame = +3

Query: 51  MSEGTATIRTRKFMTNRLLARKHDGXCDVLHSRKTDRQQN 170
           MSE   TIRTRKFMTNRLL RK     D+LH  K +  +N
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRK-QMVVDILHPGKANLSKN 38



 Score = 35.1 bits (77), Expect = 0.001
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 145 PGKPTVSKTEIREKLAKMYK 204
           PGK  +SK EIREKLA+MYK
Sbjct: 30  PGKANLSKNEIREKLAQMYK 49


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 39.5 bits (88), Expect = 6e-05
 Identities = 23/40 (57%), Positives = 26/40 (65%)
 Frame = +3

Query: 51  MSEGTATIRTRKFMTNRLLARKHDGXCDVLHSRKTDRQQN 170
           MSE   TIRTRKFMTNRLL RK     D+LH  K +  +N
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRK-QMVVDILHPGKANISKN 38



 Score = 32.3 bits (70), Expect = 0.009
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 145 PGKPTVSKTEIREKLAKMYK 204
           PGK  +SK ++REKL +MYK
Sbjct: 30  PGKANISKNDLREKLGQMYK 49


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 24   EPKSRK*SKMSEGTATIRTRK 86
            EP SR+ S  SEG  TIR +K
Sbjct: 1074 EPASRETSPDSEGRLTIRKKK 1094


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 63  TATIRTRKFMTNRLLARKHDGXCD 134
           T  +  RK + NRL+ +   G C+
Sbjct: 43  TKPVEARKLIRNRLMTKSTTGWCE 66


>SPBC56F2.12 |ilv5||acetohydroxyacid
           reductoisomerase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 10  AVNWTSRNLENNQK*VKE 63
           A++WT R LE N+K + E
Sbjct: 331 AIDWTPRFLEANKKVLNE 348


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 156 RFSWNARHRTYHRACAPTICWS*IYAYESSLF 61
           RF+W A  R Y+R   P +  S   A+   +F
Sbjct: 60  RFNWPAFSRLYNRVIGPLMRESEKNAWNGVIF 91


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 87  FMTNRLLARKHDG 125
           F T RLL  KHDG
Sbjct: 288 FYTMRLLRNKHDG 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,193
Number of Sequences: 5004
Number of extensions: 14000
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)