Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B15
(216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 37 0.003
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 34 0.014
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 34 0.014
10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020 27 2.7
05_03_0284 + 11599390-11600007,11600109-11600153,11600343-116005... 27 2.7
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 26 4.8
07_03_0665 + 20470160-20471542 25 8.3
07_01_0964 + 8091086-8091139,8091548-8092222,8092285-8092518 25 8.3
04_03_0115 - 11428116-11429594 25 8.3
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 25 8.3
02_01_0121 + 890391-890429,890565-890730,891209-891769,892365-89... 25 8.3
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +1
Query: 145 PGKPTVSKTEIREKLAKMYKV 207
PG+P VSK E++EKLAK+Y+V
Sbjct: 35 PGRPNVSKAELKEKLAKLYEV 55
Score = 33.5 bits (73), Expect = 0.024
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 69 TIRTRKFMTNRLLARK 116
T+RTRKFMTNRLL+RK
Sbjct: 11 TLRTRKFMTNRLLSRK 26
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 34.3 bits (75), Expect = 0.014
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 69 TIRTRKFMTNRLLARKHDGXCDVLH 143
T+RTRKFMTNRLL+RK +VLH
Sbjct: 11 TLRTRKFMTNRLLSRK-QFVLEVLH 34
Score = 32.3 bits (70), Expect = 0.055
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 145 PGKPTVSKTEIREKLAKMYKV 207
PG+ VSK +++EKLAK+Y+V
Sbjct: 35 PGRANVSKADLKEKLAKLYEV 55
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 34.3 bits (75), Expect = 0.014
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 69 TIRTRKFMTNRLLARKHDGXCDVLH 143
T+RTRKFMTNRLL+RK +VLH
Sbjct: 11 TLRTRKFMTNRLLSRK-QFVLEVLH 34
Score = 32.3 bits (70), Expect = 0.055
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +1
Query: 145 PGKPTVSKTEIREKLAKMYKV 207
PG+ VSK +++EKLAK+Y+V
Sbjct: 35 PGRANVSKADLKEKLAKLYEV 55
>10_08_0038 - 14336633-14336864,14336970-14337187,14337302-14339020
Length = 722
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = -1
Query: 195 FSELFTDLSFADGRFSWNARHRTYHRACAPTICWS*IYAYESSLFLHSFLIIFEISARPI 16
+ L L F DG +W A H Y A + + ++ L L F I +S +
Sbjct: 461 YEGLLRHLPFGDGSVTWVAYHGDYDLAFLLRLLQGGDHGSDALLTLSCFFKIVSLSGHQM 520
Query: 15 H 13
H
Sbjct: 521 H 521
>05_03_0284 +
11599390-11600007,11600109-11600153,11600343-11600550,
11600645-11600726,11601894-11602398
Length = 485
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 180 TDLSFADGRFSWNARHRTYHRACAPTI 100
TD+S+A+ R S++ R H AC+ T+
Sbjct: 399 TDVSYANVRGSYDVRAAPIHFACSDTV 425
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 184 FHGSQFC*RSVFLECKTSH--XPSCLRANNLLVINLRVRI 71
FHG FC S F C+T H S LV+++ R+
Sbjct: 475 FHGGSFCTESAF--CRTYHRYATSLASRTGALVVSVEYRL 512
>07_03_0665 + 20470160-20471542
Length = 460
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 184 FHGSQFC*RSVFLECKTSH--XPSCLRANNLLVINLRVRI 71
FHG FC S F C+T H S LV+++ R+
Sbjct: 104 FHGGSFCTESAF--CRTYHRYASSLASRAGALVVSVEYRL 141
>07_01_0964 + 8091086-8091139,8091548-8092222,8092285-8092518
Length = 320
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 61 EQRRFVRVNL*PTDCWRASTMVXAMSCIP 147
EQ+R RV W+A V A SC+P
Sbjct: 131 EQQRASRVQAVSAYLWKALAGVVAASCVP 159
>04_03_0115 - 11428116-11429594
Length = 492
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 201 VHFSELFTDLSFADGRFSWNARHR 130
VH S+L L ADG W+A HR
Sbjct: 189 VHRSQLPPYLLHADGTDRWSAHHR 212
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 9 GCELDEPKSRK*SKMSEGTATI 74
GC+++E K + S M+EG A +
Sbjct: 478 GCDMEEVKDEEESTMNEGEAAV 499
>02_01_0121 +
890391-890429,890565-890730,891209-891769,892365-892845,
892952-893033,893818-894021
Length = 510
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 112 ASTMVXAMSCIPGKPTVSKTEIREKLAKM 198
++T+ A +CIP PTV +R+ +M
Sbjct: 264 SATLQSATTCIPPPPTVRSVSMRDMGTEM 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,678,340
Number of Sequences: 37544
Number of extensions: 89262
Number of successful extensions: 203
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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