Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B15
         (216 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...    44   1e-05
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    37   0.002
AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical ...    26   3.2  
U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical pr...    23   3.9  
U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical pr...    23   3.9  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    25   5.5  
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = +1

Query: 145 PGKPTVSKTEIREKLAKMYKVTPD 216
           PG+PTV K +IREK+AK+YK TPD
Sbjct: 30  PGRPTVPKADIREKIAKLYKTTPD 53



 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 69  TIRTRKFMTNRLLARK 116
           TIRTRK +TN+LL RK
Sbjct: 6   TIRTRKVLTNKLLYRK 21


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 142 IPGKPTVSKTEIREKLAKMYKVTPD 216
           +PG+PT  K +IREK+A  Y + PD
Sbjct: 7   LPGRPTTLKADIREKIANFYNINPD 31


>AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical
           protein ZC190.5 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 108 PTICWS*IYAYESSLFLHSFLI 43
           P+I WS +  +ES L  HSF +
Sbjct: 15  PSIIWSTLTVFESILVFHSFTV 36


>U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical
           protein F41C3.8b protein.
          Length = 348

 Score = 23.0 bits (47), Expect(2) = 3.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 114 CAPTICWS*IYAYESSLFLHSFLIIFEI 31
           C PTI WS  +A  + L  +  +I   I
Sbjct: 302 CDPTIYWSAFFACTAFLIFYCVIIFLVI 329



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 204 FVHFSELFTDLSFADGRFSWNA 139
           FVHF+E   +  + D    W+A
Sbjct: 289 FVHFNEGMFERHYCDPTIYWSA 310


>U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical
           protein F41C3.8a protein.
          Length = 316

 Score = 23.0 bits (47), Expect(2) = 3.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 114 CAPTICWS*IYAYESSLFLHSFLIIFEI 31
           C PTI WS  +A  + L  +  +I   I
Sbjct: 270 CDPTIYWSAFFACTAFLIFYCVIIFLVI 297



 Score = 21.4 bits (43), Expect(2) = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 204 FVHFSELFTDLSFADGRFSWNA 139
           FVHF+E   +  + D    W+A
Sbjct: 257 FVHFNEGMFERHYCDPTIYWSA 278


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
           protein T19A5.1 protein.
          Length = 1280

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 ASTMVXAMSCIPGKPTVSKTEIREK 186
           A+TM+ ++SC P K   S   +REK
Sbjct: 487 ATTMICSLSCTPEKYEESMAPLREK 511


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 139 KTSHXPSCL-RA-NNLLVINLRVRIVAVPSLIFDY 41
           KTS    CL RA NN++V+     ++  PSL+  Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
           protein F17C11.10 protein.
          Length = 1101

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/37 (21%), Positives = 20/37 (54%)
 Frame = +2

Query: 95  QQIVGAQARWXVRCLAFQENRPSAKLRSVKSSLKCTK 205
           + ++G  + + V+C   ++     K RS+++ + C K
Sbjct: 121 ENVIGGSSDYAVKCTNMKDLDAELKTRSLEAEVLCVK 157


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 212 GVTLYILASFSRISVLLTVGFPGMQDIA 129
           G+   IL   S + + LT+GFP + DIA
Sbjct: 291 GIIHDILNPKSELKLSLTLGFPNIGDIA 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,937,172
Number of Sequences: 27780
Number of extensions: 80486
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)