Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B15
(216 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 1.7
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 1.7
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 1.7
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 1.7
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 1.7
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 1.7
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 1.7
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 2.2
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 19 5.1
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 19 5.1
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 19 6.7
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 19 6.7
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 19 6.7
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 6.7
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 6.7
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 19 8.8
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 19 8.8
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 19 8.8
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 19 8.8
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 19 8.8
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.0 bits (42), Expect = 1.7
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = +1
Query: 142 IPGKPTVSKTEIREKL 189
+PGKPT + E++ +
Sbjct: 136 LPGKPTTTSDELKRDI 151
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 20.6 bits (41), Expect = 2.2
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = +1
Query: 142 IPGKPTVSKTEIR 180
+PGKPT + E++
Sbjct: 136 LPGKPTTTSDELK 148
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 19.4 bits (38), Expect = 5.1
Identities = 10/41 (24%), Positives = 14/41 (34%)
Frame = -1
Query: 213 WRHFVHFSELFTDLSFADGRFSWNARHRTYHRACAPTICWS 91
W F L DL + WN R+ +CW+
Sbjct: 121 WALFYLLVSLRIDLPWRTCGNPWNTRYCLTPTERLEALCWT 161
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 19.4 bits (38), Expect = 5.1
Identities = 10/41 (24%), Positives = 14/41 (34%)
Frame = -1
Query: 213 WRHFVHFSELFTDLSFADGRFSWNARHRTYHRACAPTICWS 91
W F L DL + WN R+ +CW+
Sbjct: 174 WALFYLLVSLRIDLPWRTCGNPWNTRYCLTPTERLEALCWT 214
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 19.0 bits (37), Expect = 6.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 212 GVTLYILASFSRISVLL 162
GVT+Y+L S S +S +L
Sbjct: 39 GVTMYVL-SISSVSEVL 54
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 19.0 bits (37), Expect = 6.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 129 CDVLHSRKT 155
CD+LH R T
Sbjct: 217 CDILHLRHT 225
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 19.0 bits (37), Expect = 6.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 55 LIFDYFRDFGSS 20
LIF+ F+DF S
Sbjct: 184 LIFNQFQDFSES 195
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 19.0 bits (37), Expect = 6.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 55 LIFDYFRDFGSS 20
LIF+ F+DF S
Sbjct: 184 LIFNQFQDFSES 195
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 19.0 bits (37), Expect = 6.7
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = -3
Query: 55 LIFDYFRDFGSS 20
LIF+ F+DF S
Sbjct: 184 LIFNQFQDFSES 195
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 18.6 bits (36), Expect = 8.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 136 SCIPGKPTVSK 168
SC PG P SK
Sbjct: 533 SCAPGAPLDSK 543
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 18.6 bits (36), Expect = 8.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 136 SCIPGKPTVSK 168
SC PG P SK
Sbjct: 533 SCAPGAPLDSK 543
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 18.6 bits (36), Expect = 8.8
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +1
Query: 136 SCIPGKPTVSK 168
SC PG P SK
Sbjct: 533 SCAPGAPLDSK 543
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 18.6 bits (36), Expect = 8.8
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -1
Query: 201 VHFSELFTD 175
+HF++LF D
Sbjct: 461 IHFAQLFAD 469
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 18.6 bits (36), Expect = 8.8
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -1
Query: 201 VHFSELFTD 175
+HF++LF D
Sbjct: 461 IHFAQLFAD 469
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,464
Number of Sequences: 438
Number of extensions: 1084
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used: 3154875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
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