Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B14
         (223 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    91   7e-20
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    29   0.59 
Z92829-10|CAB07350.2|  319|Caenorhabditis elegans Hypothetical p...    28   1.0  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   1.0  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   1.0  
Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr...    26   3.1  
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    26   4.2  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    26   4.2  
Z83226-2|CAB05723.1|  211|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z71261-1|CAA95801.2|  437|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical p...    25   9.6  
AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical ...    25   9.6  
AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical ...    25   9.6  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 91.5 bits (217), Expect = 7e-20
 Identities = 43/66 (65%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
 Frame = +2

Query: 29  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADSSKMYVVCGGI 205
           MQNDAG+ V+LY PRKCS+SNR+I  KDHASVQ+   DVDP TGR     S  Y +CG I
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60

Query: 206 RRMGES 223
           RRMGES
Sbjct: 61  RRMGES 66


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 185 TSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAFCV 21
           +S   + H    GPRP     P R P       +P+ S       IH+RR  +C+
Sbjct: 35  SSGEGRGHHHKHGPRPPRPNRPPRPPPATPPPTTPAPSCPGGWSLIHRRRGPWCI 89


>Z92829-10|CAB07350.2|  319|Caenorhabditis elegans Hypothetical
           protein F10A3.15 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 147 STSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCILCI*APP 7
           ST+ I       S+  +  +LA HF  +Y S  SP++  I  + A P
Sbjct: 89  STAQIALAILCSSYGLVLTMLAIHFFYRYLSVKSPSNLSIFSLKAAP 135


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 125 APMRG-PSHGSDDYSPSI-SLG-STSQRIHQRRSAFCVSKLH 9
           APM G P +    Y P + S G  T  RIH +  AFC+S  H
Sbjct: 865 APMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFH 906


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 125 APMRG-PSHGSDDYSPSI-SLG-STSQRIHQRRSAFCVSKLH 9
           APM G P +    Y P + S G  T  RIH +  AFC+S  H
Sbjct: 740 APMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFH 781


>Z81109-2|CAB03244.1|  408|Caenorhabditis elegans Hypothetical
           protein R10D12.2 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 102 WIRRLLAEHFLGQYKSTNSPASFCILC 22
           WI  +L    L  Y  TN  A  C++C
Sbjct: 30  WINLILVSFTLNNYDQTNEVARTCLVC 56


>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -2

Query: 198 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 25
           PQ+ +    S      GS S    C  AW   WI+    E  + + +  N+ ++  +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849


>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
           protein F40E10.4 protein.
          Length = 1410

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = -2

Query: 198 PQTTYILEESAARPVAGSTSAITSCTDAWSFAWIRRLLAEHFLGQYKSTNSPASFCIL 25
           PQ+ +    S      GS S    C  AW   WI+    E  + + +  N+ ++  +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLL 849


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 114 WSFAWIRRLLAEHFLGQYKS 55
           W+ AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
           protein Y18D10A.13 protein.
          Length = 2417

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 127 LHRC--VVLRMDQTITRRAFPWAV 62
           L RC  VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 2417

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 127 LHRC--VVLRMDQTITRRAFPWAV 62
           L RC  VVLR D ++ RR + W +
Sbjct: 276 LRRCLFVVLRRDMSLNRRLYTWLI 299


>Z83226-2|CAB05723.1|  211|Caenorhabditis elegans Hypothetical
           protein F43D2.3 protein.
          Length = 211

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 191 PRTSWRSQQHVRLQGPRPLSRAAPM-RGPSHGSDDYS 84
           P TS   Q++ R QGP+P  RAA   + P +    YS
Sbjct: 72  PATS-NGQRNTRGQGPKPKGRAATRNKSPDNSPRMYS 107


>Z71261-1|CAA95801.2|  437|Caenorhabditis elegans Hypothetical
           protein F21C3.1 protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 179 WRSQQHVR-LQGPRPLSRAAPMRGPSHGSDDYSPSISLGSTSQR 51
           WRS  +   L  P P  +   + G S G D  +   S  ST+QR
Sbjct: 316 WRSVNNSEALSPPAPRKKTVFLSGSSDGDDCQATIHSFTSTNQR 359


>Z49072-4|CAA88882.4|  414|Caenorhabditis elegans Hypothetical
           protein T24A11.3 protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 38  DAGEFVDLYCPRKCSASNRL 97
           DA    D+YCP  C   N L
Sbjct: 254 DAKVINDIYCPNACQGRNHL 273


>U28928-12|AAL16320.2|  597|Caenorhabditis elegans Hypothetical
           protein C44B7.2a protein.
          Length = 597

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 197 HRPRTSWRSQQHVRLQGPRPLSRAAPMRGPSHGSDDYSP 81
           HRP  S+R +   R  G     R +  RG  HGSD Y P
Sbjct: 542 HRPSPSFRGRG--RGYGDSGFRRES-YRGGLHGSDRYGP 577


>AL032644-1|CAA21666.2|  604|Caenorhabditis elegans Hypothetical
           protein Y51H1A.2 protein.
          Length = 604

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 111 SFAWIRRLLAEHFLGQY 61
           S AWIR +L E+ LGQY
Sbjct: 123 SRAWIRIVLNENALGQY 139


>AC103567-7|AAL35730.2|  337|Caenorhabditis elegans Hypothetical
           protein Y51F10.3 protein.
          Length = 337

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 134 SRAAPMRGPSHGSDDYSPSISLGSTSQRIHQRRSAF 27
           +R  P  GPS  +   S S  L S+ +  H+R +AF
Sbjct: 234 TRVNPRGGPSSSTHRSSSSDELISSERGAHRRTAAF 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,894,750
Number of Sequences: 27780
Number of extensions: 102372
Number of successful extensions: 396
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)