Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B14
         (223 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 1.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 156 VAGSTSAITSCTDAWSFAWI 97
           VAG   A+  C    +F+WI
Sbjct: 354 VAGVMRAVKRCNATGAFSWI 373


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 146 PRPLSRAAPMRGPSHGSDDYSPSISLGSTSQRIHQ 42
           P P S+  P  GP       +PS  + S +  IHQ
Sbjct: 40  PNP-SQGPPPGGPPGAPPSQNPSQMMISPASGIHQ 73


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 2.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 158  GRAADSSKMYVVCGGIRRMGES 223
            GR  +S+K YVV   +   GES
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGES 1203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 26  KMQNDAGEFVDLYC 67
           K+  +AGEF +L C
Sbjct: 592 KLPMNAGEFANLQC 605



 Score = 19.8 bits (39), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 168  AARPVAGSTSAITSCTDAWS 109
            AAR +  +T++IT   +AWS
Sbjct: 1466 AARFIEVATNSITLHLNAWS 1485



 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 119  MRGPSHGSD 93
            +RG  HGSD
Sbjct: 1608 LRGKGHGSD 1616


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 219 SPILRMPP 196
           SP+LR PP
Sbjct: 466 SPVLRSPP 473


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 9.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 219 SPILRMPP 196
           SP+LR PP
Sbjct: 466 SPVLRSPP 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,896
Number of Sequences: 438
Number of extensions: 1131
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)