Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B13
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.16 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   0.85 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   1.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   2.6  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   3.4  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   3.4  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   4.5  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   4.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   4.5  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   6.0  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.5 bits (63), Expect = 0.16
 Identities = 23/83 (27%), Positives = 39/83 (46%)
 Frame = -1

Query: 341 SSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLS 162
           SS  + + S   S +I +SS +  S S A + +       ++ S+ T P S++   + +S
Sbjct: 26  SSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVS 85

Query: 161 DSSQKCGHGNAGGYTQRESCTRT 93
            SSQ+    +A   T   S T T
Sbjct: 86  SSSQQSSSSSA-SLTSSSSATLT 107


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -1

Query: 293  LASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQ 114
            L+S     SVS+ PSR       +  +S    P + A+T  +  +  ++  H N GG  Q
Sbjct: 1339 LSSMLKGGSVSRTPSRQNSALRRE--QSVRAPPSNVAVTSANSFELLEEHDHDNDGG--Q 1394

Query: 113  RESCTRT 93
            ++S ++T
Sbjct: 1395 KDSNSKT 1401


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 266 VSQAPSRARHKPHHDVARSAT--TDPPSAAITCTSLSDSSQK 147
           VSQ PS  R++ HH V    T     PS A +  S  D S K
Sbjct: 226 VSQYPSGHRYETHHSVHNLGTKRDSVPSGADSDLSFKDPSGK 267


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 232 GLWRALLGACETDLRAQLDARM 297
           GL+R +L AC  +LR ++ ARM
Sbjct: 472 GLFRKVLFACPVELRPEVYARM 493


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 73  LTARRHTVR--VQDSRCVYPPALPWPHFCEESDSEVQVIAAEGGSVVAERATSWCGLWRA 246
           L A  H+ +  V   + + PP+LP   F     S+ Q+I++EG         +W      
Sbjct: 314 LNANAHSFKLNVVIEKGIIPPSLPDDEFIPWMLSDFQLISSEGSQSKFLLIIAWKSNLNT 373

Query: 247 LLGACETDL 273
           ++  C   L
Sbjct: 374 VIQKCNLSL 382


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 15/63 (23%), Positives = 32/63 (50%)
 Frame = -1

Query: 344 ESSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSL 165
           E + +S +  AP + ++  S+     V+  P+R+ + P+    R+++++   A     S 
Sbjct: 460 EKTGKSNSQQAPSNHVLSKSNTVPNLVTGFPTRSDNPPNEKRRRTSSSENSRALDIQLSA 519

Query: 164 SDS 156
           SDS
Sbjct: 520 SDS 522


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 275 RRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCG 141
           R     +  R RH+P+H V    ++D  S   +  S+  + +K G
Sbjct: 175 RAVTMDSEKRTRHRPNHLVDEFVSSDMSSVPQSMPSVGSNLEKRG 219


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = -1

Query: 344 ESSRRSYACSAPRSRLILASSCARRSVSQAP-SRARHKPHHDVARSATTDPPSAAITCTS 168
           ES    YA  +P S   L  S   +S S +P S   H P +   +S    P ++    ++
Sbjct: 655 ESQFLEYANDSPNSSESL-ESLNNQSYSSSPYSVFSHPPPYMGRQSLNDSPQTSDFKASN 713

Query: 167 LSDSS 153
           L+DSS
Sbjct: 714 LNDSS 718


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = -1

Query: 296 ILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCGHGNAGGYT 117
           +L ++ +  SVS   S +        + + TT P S++ + +S S SS      ++   +
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSS 181

Query: 116 QRES 105
              S
Sbjct: 182 SSSS 185


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -1

Query: 227 HDVARS--ATTDPPSAAITCTSLSDSSQKCGHGNAGGYTQRE 108
           H  A S  A+  PPS+ +TC S   + Q   + +A   T  +
Sbjct: 107 HSYASSFDASLSPPSSPLTCVSQIHTEQNFNNNDAFSLTNSQ 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,620
Number of Sequences: 5004
Number of extensions: 9835
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)