Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B13
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    29   1.2  
U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical pr...    28   1.6  
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    27   5.0  
AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
            protein Y67D8A.1 protein.
          Length = 1020

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = -1

Query: 290  ASSCARRSVSQAPSRARHKPHHD--------VARSATTDPPSAAITCTSLSDSSQKCGHG 135
            +S   +R V  + S ++H  HH         +A   T +P S  +T  +++ S       
Sbjct: 947  SSEKKKRHVGGSSSSSQHHHHHQQQQTPLLRLATPLTPEPSSGTVTPRAITPSPLSSSLN 1006

Query: 134  NAGGYTQRESC 102
             +GG  Q ESC
Sbjct: 1007 TSGGGGQDESC 1017


>U55366-3|AAY86188.1|  118|Caenorhabditis elegans Hypothetical
           protein F41F3.8 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 20/66 (30%), Positives = 22/66 (33%)
 Frame = -1

Query: 320 CSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSLSDSSQKCG 141
           C      L L   CA R    AP  A   P           PP    TC S + +   CG
Sbjct: 24  CGCGGPSLSLCGGCAPRPRVAAPPFAPPPPPSPPLPPKCECPPP---TCNSCAPAPSSCG 80

Query: 140 HGNAGG 123
            G  GG
Sbjct: 81  CGGGGG 86


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
            F57C7.1b protein.
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -1

Query: 344  ESSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSL 165
            E SR +   + PR  L L+ + +  S    PS+A+       ++S  + P     T +  
Sbjct: 1007 EPSRSNSNVAGPRRALELSGNSSSASTPAGPSKAQPAVVRPSSKSVASKPAYTKRTLSES 1066

Query: 164  SDSSQKCG 141
            S SS   G
Sbjct: 1067 SSSSDSNG 1074


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -1

Query: 344  ESSRRSYACSAPRSRLILASSCARRSVSQAPSRARHKPHHDVARSATTDPPSAAITCTSL 165
            E SR +   + PR  L L+ + +  S    PS+A+       ++S  + P     T +  
Sbjct: 1007 EPSRSNSNVAGPRRALELSGNSSSASTPAGPSKAQPAVVRPSSKSVASKPAYTKRTLSES 1066

Query: 164  SDSSQKCG 141
            S SS   G
Sbjct: 1067 SSSSDSNG 1074


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +2

Query: 86  GTLFACRTPAACT---RLRYRGHI 148
           GTL +CR PAAC      R  GH+
Sbjct: 179 GTLISCRLPAACDLPYEFRLDGHV 202


>AL021497-1|CAA16404.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2D.1 protein.
          Length = 382

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 193 GGSVVAERATSWCGLWRALLGA 258
           GG V   R  +WCG+ R  +GA
Sbjct: 353 GGYVKLIRGKNWCGIERGAIGA 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,008,170
Number of Sequences: 27780
Number of extensions: 72756
Number of successful extensions: 334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)