Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B12
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   141   2e-35
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   141   2e-35
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    25   2.8  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   3.7  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   3.7  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    24   4.8  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   4.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   4.8  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    24   4.8  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    24   6.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   6.4  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    23   8.5  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  141 bits (342), Expect = 2e-35
 Identities = 65/101 (64%), Positives = 78/101 (77%)
 Frame = +1

Query: 16  QTECSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPFTGN 195
           Q+E +FQKQP +F N KKG G        R++KDVGLGFKTP EA+ G Y+DK+CPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 196 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRH 318
           VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRH 101


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  141 bits (342), Expect = 2e-35
 Identities = 65/101 (64%), Positives = 78/101 (77%)
 Frame = +1

Query: 16  QTECSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPFTGN 195
           Q+E +FQKQP +F N KKG G        R++KDVGLGFKTP EA+ G Y+DK+CPF G 
Sbjct: 8   QSERAFQKQPHIFQNAKKGAG-------RRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQ 60

Query: 196 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRH 318
           VSIRGRILTG V   KM RTI+IRR+YLH++PKYNR+EKRH
Sbjct: 61  VSIRGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRH 101


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 162 CAFNGLARRFEA*AHIFVVPKRLTAALHADAFLAIQEDSWLLL 34
           C+F+GL    EA A   + PK  ++    D   ++QE  + +L
Sbjct: 210 CSFSGLLSGVEAAATELLDPKNPSSVTKQDLCYSLQETGFAML 252


>SPCC663.03 |pmd1||leptomycin efflux transporter
            Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 212  RPRMDTLPVNGHLL-SMYVPSTASRGVLKPRPTS--LWYLRGLRLRFTPMPFLRFKKTVG 42
            +P++DT    G  + S+   +   R V    PT   +  LRGL L   P  F+ F  + G
Sbjct: 1098 KPKIDTWSTEGKKVESLQSAAIEFRQVEFSYPTRRHIKVLRGLNLTVKPGQFVAFVGSSG 1157

Query: 41   C 39
            C
Sbjct: 1158 C 1158


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 73  IGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDK 174
           +G   S+  L   ++ GLG K   E   G YID+
Sbjct: 103 VGFDVSKPSLPVFENSGLGSKYSTEIANGVYIDE 136


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 209 PRMDTLPVNGHLLSMYVPSTASRGVLKPRPTS-LWYLRG 96
           P + T  V+    S  V    S+ +LKP PT   +YLRG
Sbjct: 319 PVLSTKNVSHEEKSHSVQDDKSKQLLKPNPTQPYFYLRG 357


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 76  GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDK 174
           G+K + +P  Y   VGLG K  +  +  T +D+
Sbjct: 515 GIKEAIQPTMYLPGVGLGNKGSKIQINMTPVDR 547


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 312  LLKSVVFRQVMEIIAPDNNCS-LHFHFLNNACQDTASDGHVTREWTSLINV 163
            +L S +   +  +++ +  C+ L+F+          SD H T E+  L++V
Sbjct: 1674 ILSSGIVEHMPNLLSQEALCAKLYFYTAFECMSSLKSDSHDTEEYNDLMDV 1724


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 222 RRCSENENAANNCYQARLSPLPA 290
           R+C+E       C++ R  PLP+
Sbjct: 45  RKCTEQMEEFRKCWEKRHGPLPS 67


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 128 ASKRRARPLKAHTLIRDVH 184
           A + +  PLKAH ++R VH
Sbjct: 248 AKRLQGLPLKAHYVLRSVH 266


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 240 HFLNNACQDTAS 205
           HF NNACQ  AS
Sbjct: 15  HFHNNACQSNAS 26


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 218 RIRPRMDTLPVNGHLLSMYVP 156
           R+  +M+  PVN  L S+YVP
Sbjct: 96  RLTAQMNHCPVNVKLYSVYVP 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,362,618
Number of Sequences: 5004
Number of extensions: 25868
Number of successful extensions: 79
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)