Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B12
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 132 8e-32
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 132 8e-32
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 132 8e-32
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 132 8e-32
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 129 5e-31
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 125 7e-30
08_02_0383 - 16539472-16539633,16543044-16543205 31 0.20
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 0.79
05_05_0321 + 24091997-24092530 27 4.2
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288... 27 4.2
11_08_0063 - 28125067-28125969 26 7.4
05_07_0293 + 29031318-29031812,29032096-29032158,29032365-290324... 25 9.7
04_03_0563 - 17195605-17196681 25 9.7
03_02_0921 + 12414932-12416569 25 9.7
01_07_0235 + 42198662-42199615,42200129-42200746 25 9.7
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 25 9.7
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 132 bits (318), Expect = 8e-32
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Frame = +1
Query: 10 ADQTECSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPF 186
A+QTE +F KQP VFL+ KK G G K + R+ K +GLGFKTPREA+EGTYIDK+CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 187 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 303
TG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 132 bits (318), Expect = 8e-32
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Frame = +1
Query: 10 ADQTECSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPF 186
A+QTE +F KQP VFL+ KK G G K + R+ K +GLGFKTPREA+EGTYIDK+CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 187 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 303
TG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 132 bits (318), Expect = 8e-32
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Frame = +1
Query: 10 ADQTECSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPF 186
A+QTE +F KQP VFL+ KK G G K + R+ K +GLGFKTPREA+EGTYIDK+CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 187 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 303
TG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 132 bits (318), Expect = 8e-32
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Frame = +1
Query: 10 ADQTECSFQKQPTVFLNRKK-GIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPF 186
A+QTE +F KQP VFL+ KK G G K + R+ K +GLGFKTPREA+EGTYIDK+CPF
Sbjct: 2 AEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPF 61
Query: 187 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 303
TG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 129 bits (311), Expect = 5e-31
Identities = 64/111 (57%), Positives = 79/111 (71%), Gaps = 8/111 (7%)
Frame = +1
Query: 10 ADQTECSFQKQPTVFLNRKKGI-GVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPF 186
A+QTE +F KQP VFL KK G K + R+ K++GLGFKTPREA+EGTYIDK+CPF
Sbjct: 2 AEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPF 61
Query: 187 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRH 318
TG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH
Sbjct: 62 TGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRH 112
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 125 bits (302), Expect = 7e-30
Identities = 54/89 (60%), Positives = 68/89 (76%)
Frame = +1
Query: 52 FLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPFTGNVSIRGRILTGVV 231
F +K G G K + R+ K++GLGFKTPREA+EGTYIDK+CPFTG VSIRGRI+ G
Sbjct: 8 FSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTC 67
Query: 232 QKMKMQRTIVIRRDYLHYLPKYNRFEKRH 318
KM RTI++RR+YLH++ KY R+EKRH
Sbjct: 68 HSAKMNRTIIVRRNYLHFVKKYQRYEKRH 96
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 217 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKR 315
+ G+V KMQ+++V+ D L + YNR+ KR
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKR 36
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 29.1 bits (62), Expect = 0.79
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 151 VEGTYIDKRCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 297
V GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>05_05_0321 + 24091997-24092530
Length = 177
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 185 NGHLLSMYVPSTASRGVLKPRPTSLWYLRG 96
+G LL+ YVP +R + PRP + L G
Sbjct: 131 DGVLLNFYVPGLLTRSMTTPRPAARGTLPG 160
>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
10729606-10729774,10730216-10730355,10730469-10730879,
10731055-10731334,10731508-10731571,10731995-10733281,
10733363-10733822,10733988-10734356
Length = 1185
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 RLSGYGLGWTRYP*MDISYQCMCLQR 149
R S YG G+ R D+ Y+C+ L R
Sbjct: 994 RTSTYGTGFARISSWDLRYRCLFLSR 1019
>11_08_0063 - 28125067-28125969
Length = 300
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 195 RVHPRPYPDRRCSENENAANNCYQARL 275
R+H R Y DRRCS + + Y A L
Sbjct: 204 RIHVRFYDDRRCSYDSSERRPFYGAWL 230
>05_07_0293 +
29031318-29031812,29032096-29032158,29032365-29032490,
29032783-29032911,29033161-29033311,29033853-29033962,
29034502-29034607,29034697-29034894,29034988-29035030,
29035129-29035207
Length = 499
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 270 APDNNCSLHFHFLNNACQDTASDGHVTRE 184
+PD NC LH+ F + + GH ++
Sbjct: 327 SPDANCFLHWRFKDRMVEVMIKAGHAVKK 355
>04_03_0563 - 17195605-17196681
Length = 358
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 198 VHPRPYPDRRCSENENAANNCYQARLSPLP 287
+ P P P+ E E + +CY+ +S LP
Sbjct: 23 ITPFPKPEAPEEEEEESQGDCYRRLMSSLP 52
>03_02_0921 + 12414932-12416569
Length = 545
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 137 RRARPLKAHTLIRDVHSRVTCPSEAVS 217
+ PLKA++L+ ++ CP + +S
Sbjct: 316 KEGNPLKAYSLLMEMCGNAACPPDRIS 342
>01_07_0235 + 42198662-42199615,42200129-42200746
Length = 523
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 100 LRYHKDVGLGFKTPREAVEGTYID 171
LR+H+D GLG +E V D
Sbjct: 296 LRFHRDGGLGITLTKEIVSAVLFD 319
>01_06_0213 + 27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 213 YPDRRCSENENAANNCYQARLS 278
Y +RCSE ++ N CYQ L+
Sbjct: 1110 YGKKRCSELMHSCNYCYQIYLA 1131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,430,481
Number of Sequences: 37544
Number of extensions: 191711
Number of successful extensions: 444
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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