Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B12
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   144   1e-35
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    29   0.73 
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr...    26   6.8  
Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z68752-6|CAD27607.1|  322|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p...    25   8.9  
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr...    25   8.9  
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr...    25   8.9  
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...    25   8.9  
AY038065-1|AAK72094.1|  322|Caenorhabditis elegans beta 1,3-gala...    25   8.9  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  144 bits (349), Expect = 1e-35
 Identities = 69/103 (66%), Positives = 82/103 (79%)
 Frame = +1

Query: 10  ADQTECSFQKQPTVFLNRKKGIGVKRSRKPLRYHKDVGLGFKTPREAVEGTYIDKRCPFT 189
           ++QTE +F KQPTV LN K  I +  S+K  RY ++VGLGFK PR+AVEGTYIDK+CP+ 
Sbjct: 2   SEQTERAFLKQPTVNLNNKARI-LAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 190 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRH 318
           GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRH 103


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 230 FRK*KCSEQLLSGAIISITCLNTTDL 307
           F   KC EQ +SG +++  C NT DL
Sbjct: 45  FHANKCFEQNVSGQLLTFCCCNTDDL 70


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 272 SRLITIVRCIFIF*TTPVRIRPRMDTLPVNGHLLSMYVPSTASRGVLK 129
           ++ +T  +   +  TTPV++ P   TLP     L++   +TA+R   K
Sbjct: 341 TKRLTTTKATTVLTTTPVKVTPATTTLPTTS--LALETTTTATRTTAK 386


>Z73976-2|CAA98285.1|  360|Caenorhabditis elegans Hypothetical
           protein T07C12.6 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -2

Query: 222 CQDTASDGHVTR-EWTSLINVCAFNGLARRFEA*AHIFVVPKRLTAALHADAFLAIQEDS 46
           C  T    H  R E+T     C + G+A++ +    + +   R    +    +  +  DS
Sbjct: 299 CTVTMYSTHAWRNEFTKYFPCCRYFGIAKKVKIATVLSIADSRKNTEIETQTYFKMLNDS 358

Query: 45  WL 40
           W+
Sbjct: 359 WV 360


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 264 DNNCSLHFHFLNNACQDTASD 202
           DN C L+   +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 318 VSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 214
           +SLL+ +   QV+  I P+   +L+FH  +  C D
Sbjct: 150 ISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184


>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
           protein F02C9.3 protein.
          Length = 1064

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 176 LLSMYVPSTASRGVLKPRPTSLWYL 102
           LL  +V   AS  VL   PTSLWYL
Sbjct: 347 LLFCFVLLLASVMVLMKGPTSLWYL 371


>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 IHG*RVHPRPYPDRRCSENENAANNCYQARLSPLPA 290
           ++G ++HP  Y  +  +   N ANN   A+ +  PA
Sbjct: 187 LYGFKIHPVAYGGQEGNSGGNTANNVAAAQNNTTPA 222


>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 IHG*RVHPRPYPDRRCSENENAANNCYQARLSPLPA 290
           ++G ++HP  Y  +  +   N ANN   A+ +  PA
Sbjct: 186 LYGFKIHPVAYGGQEGNSGGNTANNVAAAQNNTTPA 221


>Z68752-6|CAD27607.1|  322|Caenorhabditis elegans Hypothetical
           protein T12G3.8 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -3

Query: 242 FIF*TTPVRIRPRMDTLPVNGHLLSMYVPSTASRGVLKPRPTSLWYLRGLRLRFTPMPF 66
           F+F T+P R++    ++ +N +  S Y P  ++  V     T   +   +R +    PF
Sbjct: 205 FVFDTSPFRLKIHKHSISLNEYPFSRYPPYVSAGAVFLTSETIARFRNSIR-KLKMFPF 262


>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  GVKRSR-KPLRYHKDVGLGFKTPREAVEGT 162
           G+ R R KP  YH +VG+   TP  A   T
Sbjct: 501 GIARLRPKPENYHPEVGIPPMTPMSAASTT 530


>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  GVKRSR-KPLRYHKDVGLGFKTPREAVEGT 162
           G+ R R KP  YH +VG+   TP  A   T
Sbjct: 542 GIARLRPKPENYHPEVGIPPMTPMSAASTT 571


>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  GVKRSR-KPLRYHKDVGLGFKTPREAVEGT 162
           G+ R R KP  YH +VG+   TP  A   T
Sbjct: 501 GIARLRPKPENYHPEVGIPPMTPMSAASTT 530


>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 76  GVKRSR-KPLRYHKDVGLGFKTPREAVEGT 162
           G+ R R KP  YH +VG+   TP  A   T
Sbjct: 542 GIARLRPKPENYHPEVGIPPMTPMSAASTT 571


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 183 IHG*RVHPRPYPDRRCSENENAANNCYQARLSPLPA 290
           ++G ++HP  Y  +  +   N ANN   A+ +  PA
Sbjct: 186 LYGFKIHPVAYGGQEGNSGGNTANNVAAAQNNTTPA 221


>AY038065-1|AAK72094.1|  322|Caenorhabditis elegans beta
           1,3-galactosyltransferaseBRE-5 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = -3

Query: 242 FIF*TTPVRIRPRMDTLPVNGHLLSMYVPSTASRGVLKPRPTSLWYLRGLRLRFTPMPF 66
           F+F T+P R++    ++ +N +  S Y P  ++  V     T   +   +R +    PF
Sbjct: 205 FVFDTSPFRLKIHKHSISLNEYPFSRYPPYVSAGAVFLTSETIARFRNSIR-KLKMFPF 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,783,727
Number of Sequences: 27780
Number of extensions: 157735
Number of successful extensions: 412
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)