Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B11
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 165 3e-42
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 101 3e-23
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 81 5e-17
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 74 7e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 1e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 45 4e-06
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 28 0.60
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 28 0.60
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 27 1.4
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 1.4
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 27 1.4
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 1.8
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 26 2.4
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 2.4
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po... 25 4.3
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 5.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 25 5.6
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p... 24 7.4
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 24 9.8
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 165 bits (400), Expect = 3e-42
Identities = 76/112 (67%), Positives = 90/112 (80%), Gaps = 2/112 (1%)
Frame = +1
Query: 64 KAVEDLDFFIGDEAFD--ATGYSVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHF 237
+A EDLDFFIG++A + GYS+ YP+RHG +E+WD MER+ +Q +FKYLR EPEDH+F
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 238 LLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERT 393
LLTEPPLN PENRE AEIMFESFN GLYIAVQAVLALAASW S +R+
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRS 178
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 101 bits (243), Expect = 3e-23
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPL 110
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +I+FE+FN P Y+A+QAVL+L AS ++
Sbjct: 111 NPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT 148
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 81.4 bits (192), Expect = 5e-17
Identities = 40/101 (39%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +1
Query: 61 TKAVEDLDFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHF 237
T V+ D +GDEA VKYP+ +G++ D++ M + + F+ L+ +P
Sbjct: 44 TGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKI 103
Query: 238 LLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAA 360
LLTEPP+N NRE + E MFE + G+Y+A+QAVL+L A
Sbjct: 104 LLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYA 144
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 74.1 bits (174), Expect = 7e-15
Identities = 43/113 (38%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Frame = +1
Query: 34 VGDQSTRRMTKAVEDLDFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIF--K 204
VG R+ + D F+G EA + G ++ P+ G++++W ME I I+ +
Sbjct: 39 VGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQ 97
Query: 205 YLRAEPEDHHFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 363
L PE+H LLTEPPL N+E +AE +E+ NVP L ++Q VLAL AS
Sbjct: 98 QLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYAS 150
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 1e-12
Identities = 34/84 (40%), Positives = 45/84 (53%)
Frame = +1
Query: 118 GYSVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPLNTPENREYLAEIM 297
G +K +R+G VE+WD+ G+ + L+ P +H L+TEP N PENR E M
Sbjct: 62 GMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETM 121
Query: 298 FESFNVPGLYIAVQAVLALAASWK 369
FES P Y+A Q A AS K
Sbjct: 122 FESLRCPATYLAKQETCAAFASGK 145
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.0 bits (129), Expect = 2e-09
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +1
Query: 118 GYSVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPLNTPENREYLAEIM 297
G VK +G+++DW+ E+G+ + L+ P ++ ++TEP N R+ + E
Sbjct: 65 GMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAA 124
Query: 298 FESFNVPGLYIAVQAVLALAASWKS 372
FE +VP Y+ QAV A+ KS
Sbjct: 125 FEQLHVPAFYLTKQAVCVAFANSKS 149
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 45.2 bits (102), Expect = 4e-06
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 136 PVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPLNTPENREYLAEIMFESFNV 315
P ++ +WDLME+ ++ K L + +H +TEP N R + E++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 316 PGLYIAVQAVLALAASWKSRTS 381
P + + + + + K +S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 27.9 bits (59), Expect = 0.60
Identities = 22/88 (25%), Positives = 35/88 (39%)
Frame = +1
Query: 49 TRRMTKAVEDLDFFIGDEAFDATGYSVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPED 228
T K +E LD E + + VK + + L RY +F + + E E
Sbjct: 326 TENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEI 385
Query: 229 HHFLLTEPPLNTPENREYLAEIMFESFN 312
+ + LN EN+E + EI + N
Sbjct: 386 NAHQFGKLDLNDTENKELVTEIFDSAIN 413
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.9 bits (59), Expect = 0.60
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +1
Query: 13 AIKETAKVGDQSTRRMTKAVEDLDFFIGDEAFDATGYSVKYPVRHGLVEDWDLMERYIEQ 192
A++ T++ + S + + K +E F+G AFD G + ++ W L +E+
Sbjct: 162 AVESTSQSSEISFK-LIKVIEGHHTFVGGLAFDPMGQFLASQSFDHTLKVWKLSTFGVEK 220
Query: 193 GIFKYLRAEPEDHHFL 240
I K P + FL
Sbjct: 221 SIAKPFEQMPTGNRFL 236
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 149 PWRTGYFTEYPVASNASSPMKKSKSSTA 66
P+ TGYF +Y SSP ++ SS A
Sbjct: 88 PYGTGYFNQYAEPIEESSPSYQALSSMA 115
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 211 RAEPEDHHFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 363
+A+ + HH TEP + E REY+ E + E + P + I + L AS
Sbjct: 9 QAKQQPHH---TEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLAS 56
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 232 HFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSA 384
+F + L+ P R+YL ++ I+V +L L WKS TSA
Sbjct: 109 YFTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSA 159
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 229 HHFLLTEPPLNTPENREYLAEIMFESFNVPGL 324
H FLLT TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 163 WDLMERYIEQGIFKYLRAEPEDHHFLLTEPPLNTPENREYLAEIMFESF 309
WDL+ R + G+ + A D+ LLT+P P +++FE F
Sbjct: 78 WDLVMRNV--GVMEPSMA---DYSLLLTQPVFTMPSIEHNTIQLVFEEF 121
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 2.4
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 127 VKYPVRHGLVEDWDLMERYIEQGIF 201
+K +H +++ WD+ RY+ G+F
Sbjct: 603 IKNSEKHIVMKPWDICSRYLHGGMF 627
>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 4.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 209 KYLKIPCSIYLSIKSQSSTRPWRTGYFTEYPVASNASSPMKKSKSST 69
KY+ +S+ S ++ P R Y YPV NAS+ + S S+T
Sbjct: 4 KYILASGICLVSLLSSTNAAP-RHLYVKRYPVIYNASNITEVSNSTT 49
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 238 LLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAV 345
+LTE + T N E+L +++ + +Y+A++ V
Sbjct: 253 VLTERDILTTANSEWLVRLLYAFQDTSNIYLAMEFV 288
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 5.6
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 220 PEDHHFLLTEP-PLNTPENREYLAEIMFESFN 312
PE+ F + E PL+ E + + E++FE++N
Sbjct: 174 PEEDFFRVLETAPLHAEEVSKKMKELLFETYN 205
>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 24.2 bits (50), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 4 RGIAIKETAKVGDQSTRRMTKAVEDL 81
RG++I E A + ++ R+ K EDL
Sbjct: 369 RGLSITELADIAGRNVLRVWKTTEDL 394
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 193 GIFKYLRAEPEDHHFLLTEPPLNT 264
G+ Y R +P D+H LL +P N+
Sbjct: 318 GLANYSRLQPSDYH-LLPDPSSNS 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,614,403
Number of Sequences: 5004
Number of extensions: 31416
Number of successful extensions: 104
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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