Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B11
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 196 6e-51
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 103 4e-23
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 103 4e-23
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 103 4e-23
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 103 4e-23
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 103 4e-23
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 103 4e-23
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 103 4e-23
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 103 4e-23
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 103 4e-23
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 103 4e-23
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 101 2e-22
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 93 9e-20
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 71 4e-13
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 66 1e-11
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 40 6e-04
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 40 6e-04
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 40 6e-04
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 37 0.005
Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr... 27 4.9
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei... 27 4.9
AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-l... 27 4.9
AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-l... 27 4.9
AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical ... 27 4.9
AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical... 27 4.9
Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical pr... 27 6.4
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat... 27 6.4
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi... 27 6.4
AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein h... 27 6.4
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 26 8.5
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 196 bits (477), Expect = 6e-51
Identities = 97/134 (72%), Positives = 108/134 (80%), Gaps = 6/134 (4%)
Frame = +1
Query: 10 IAIKE-TAKVGDQSTR---RMTKAVEDLDFFIGDEAFD--ATGYSVKYPVRHGLVEDWDL 171
IA+K+ A Q+ R R+ ++DLDFFIGDEA AT Y+VKYP+RHG+VEDWDL
Sbjct: 36 IAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDL 95
Query: 172 MERYIEQGIFKYLRAEPEDHHFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 351
MERY EQ IFKYLRAEPEDH FLLTEPPLNTPENREY AEIMFESFNVPGLYIAVQAVLA
Sbjct: 96 MERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLA 155
Query: 352 LAASWKSRTSAERT 393
L ASW SR + ER+
Sbjct: 156 LTASWNSREANERS 169
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 8 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 67
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 68 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 105
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 38 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 97
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 98 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 135
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 103 bits (248), Expect = 4e-23
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 111
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+A+QAVL+L AS ++
Sbjct: 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT 149
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 101 bits (242), Expect = 2e-22
Identities = 46/98 (46%), Positives = 65/98 (66%), Gaps = 1/98 (1%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDHHFLLTEPPL 258
D ++GDEA G ++KYP+ HG+V +WD ME+ + LR PE+H LLTE PL
Sbjct: 51 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPL 110
Query: 259 NTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
N NRE + +IMFE+FN P +Y+ +QAVL+L AS ++
Sbjct: 111 NPKSNREKMTQIMFETFNTPAMYVNIQAVLSLYASGRT 148
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 92.7 bits (220), Expect = 9e-20
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Frame = +1
Query: 34 VGDQSTRRMTKAVEDLDFFIGDEAFDATG-YSVKYPVRHGLVEDWDLMERYIEQGIF--K 204
VG R+ D D FIG +A G +S++YP+ HG+V +W ME+ E IF
Sbjct: 38 VGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSIEYPMEHGIVNNWSDMEKIWEY-IFGQD 96
Query: 205 YLRAEPEDHHFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
L+ PE+H LLT+ PLN +NRE AEI FE+FNVP LYI +QAVL+L A+ ++
Sbjct: 97 QLKIFPEEHPVLLTDAPLNPLKNRERSAEIFFETFNVPALYIQMQAVLSLYATGRT 152
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 70.5 bits (165), Expect = 4e-13
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Frame = +1
Query: 43 QSTRRMTKAVEDLDFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMERYIEQGIF-KYLRA 216
+ST+R+ +E D +G+E + YP+ +G+V +WD M + + L
Sbjct: 42 RSTQRVGN-IEIKDLMVGEECSQLRQMLDINYPMDNGIVRNWDDMAHVWDHTFGPEKLDI 100
Query: 217 EPEDHHFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAA 360
+P++ LLTEPPLN NRE + ++MFE + +Y+AVQAVL L A
Sbjct: 101 DPKECKLLLTEPPLNPNSNREKMFQVMFEQYGFNSIYVAVQAVLTLYA 148
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 65.7 bits (153), Expect = 1e-11
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Frame = +1
Query: 19 KETAKVGDQSTRRMTKAVEDLDFFIGDEAF--DATGYSVKYPVRHGLVEDWDLMERYIEQ 192
+E + GD S + TK + +FFIG +++ ++ GL+EDW+L E+ +E
Sbjct: 55 QEAMEEGDNS-KVQTK--REKNFFIGTTKIIVPRARTNMESFMKEGLIEDWELFEKIVEH 111
Query: 193 GIFKYLRAEPEDHHFLLTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKS 372
L + P +H L +E N RE L EIMFE F VP Y++ VL+ A ++
Sbjct: 112 SYENILYSNPSEHPVLFSESSWNDRARREKLTEIMFEKFQVPAYYLSKNVVLSCFAQGRT 171
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMER 180
D ++GDEA G ++KYP+ HG+V +WD ME+
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMER 180
D ++GDEA G ++KYP+ HG+V +WD ME+
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLMER 180
D ++GDEA G ++KYP+ HG+V +WD ME+
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEK 85
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 37.1 bits (82), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 82 DFFIGDEAFDATGY-SVKYPVRHGLVEDWDLM 174
D ++GDEA G ++KYP+ HG+V +WD M
Sbjct: 52 DSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83
>Z67882-2|CAA91799.1| 1318|Caenorhabditis elegans Hypothetical
protein F22E10.1 protein.
Length = 1318
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -3
Query: 114 RIKRF--ISYEEIQIFNGLSHAPGTLITNFCS 25
R++ F + Y++ F+ +HAPG LIT S
Sbjct: 834 RVQSFKNLLYQDASFFDNPAHAPGKLITRLAS 865
>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
protein F22E10.3 protein.
Length = 1327
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 105 RFISYEEIQIFNGLSHAPGTLITNFCS 25
R + Y++ F+ +HAPG LIT S
Sbjct: 848 RNLLYQDASYFDNPAHAPGKLITRLAS 874
>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
related (146.8 kD)(pgp-14) protein.
Length = 1327
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 105 RFISYEEIQIFNGLSHAPGTLITNFCS 25
R + Y++ F+ +HAPG LIT S
Sbjct: 848 RNLLYQDASYFDNPAHAPGKLITRLAS 874
>AF143900-1|AAF66677.1| 284|Caenorhabditis elegans thioredoxin-like
protein protein.
Length = 284
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 201 ENTLFYIPFHQVPIFNKTVAHGVFHRVPSRIKRFISYEEIQIFNGLSHAPGTLITNF 31
E + +PF+Q + + GV R P ++K FI+ + F+ + T + F
Sbjct: 157 EQLIISLPFNQPVKVHSILIKGVSDRAPKKVKVFINLPKTTDFDNATALEPTQMLEF 213
>AF143405-1|AAF66636.1| 284|Caenorhabditis elegans thioredoxin-like
protein TXL protein.
Length = 284
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 201 ENTLFYIPFHQVPIFNKTVAHGVFHRVPSRIKRFISYEEIQIFNGLSHAPGTLITNF 31
E + +PF+Q + + GV R P ++K FI+ + F+ + T + F
Sbjct: 157 EQLIISLPFNQPVKVHSILIKGVSDRAPKKVKVFINLPKTTDFDNATALEPTQMLEF 213
>AC024859-3|AAK29969.2| 871|Caenorhabditis elegans Hypothetical
protein Y71H2AM.10 protein.
Length = 871
Score = 27.1 bits (57), Expect = 4.9
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 200 KIPCSIYLSIKSQSSTRPWRTGYFTEYPV 114
K+P I++S + S+ + W+ G++ + P+
Sbjct: 387 KLPLKIWMSSSTLSTIKNWKVGFWRDLPL 415
>AC024810-17|AAF60759.1| 284|Caenorhabditis elegans Hypothetical
protein Y54E10A.3 protein.
Length = 284
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 201 ENTLFYIPFHQVPIFNKTVAHGVFHRVPSRIKRFISYEEIQIFNGLSHAPGTLITNF 31
E + +PF+Q + + GV R P ++K FI+ + F+ + T + F
Sbjct: 157 EQLIISLPFNQPVKVHSILIKGVSDRAPKKVKVFINLPKTTDFDNATALEPTQMLEF 213
>Z29094-1|CAA82338.1| 147|Caenorhabditis elegans Hypothetical
protein C07A9.2 protein.
Length = 147
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 139 VRHGLVEDWDLMERYIEQGIFKYLRAEPEDH 231
VR E WDL+E +EQ K AE E H
Sbjct: 10 VRKSPPEGWDLIEPTLEQFEAKMREAETEPH 40
>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
endocytosis protein6, isoform a protein.
Length = 1093
Score = 26.6 bits (56), Expect = 6.4
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1
Query: 52 RRMTKAVEDLDFFIGDEAFDATGYSVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDH 231
RR+T+ + +DF + F TG++ K+ V G ++ + ++ ++ FKYLRA+ E
Sbjct: 847 RRLTEQIL-VDFLM--RTFLETGFNNKHTV--GKTQEVTAVLKFYDE--FKYLRAQDERA 899
Query: 232 HFL 240
FL
Sbjct: 900 EFL 902
>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-mediated
endocytosis 6 protein.
Length = 1093
Score = 26.6 bits (56), Expect = 6.4
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +1
Query: 52 RRMTKAVEDLDFFIGDEAFDATGYSVKYPVRHGLVEDWDLMERYIEQGIFKYLRAEPEDH 231
RR+T+ + +DF + F TG++ K+ V G ++ + ++ ++ FKYLRA+ E
Sbjct: 847 RRLTEQIL-VDFLM--RTFLETGFNNKHTV--GKTQEVTAVLKFYDE--FKYLRAQDERA 899
Query: 232 HFL 240
FL
Sbjct: 900 EFL 902
>AF303257-1|AAG50215.1| 147|Caenorhabditis elegans G10 protein
homolog protein.
Length = 147
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 139 VRHGLVEDWDLMERYIEQGIFKYLRAEPEDH 231
VR E WDL+E +EQ K AE E H
Sbjct: 10 VRKSPPEGWDLIEPTLEQFEAKMREAETEPH 40
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical
protein F22E10.2 protein.
Length = 1324
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 105 RFISYEEIQIFNGLSHAPGTLITNFCS 25
R + Y++ F+ +HAPG+LIT +
Sbjct: 845 RNLLYQDAAYFDNPAHAPGSLITRLAA 871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,025
Number of Sequences: 27780
Number of extensions: 172448
Number of successful extensions: 464
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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