Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B09
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   122   2e-29
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   118   4e-28
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    28   0.70 
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    26   2.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   6.6  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    24   8.7  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  122 bits (294), Expect = 2e-29
 Identities = 61/100 (61%), Positives = 79/100 (79%), Gaps = 2/100 (2%)
 Frame = +1

Query: 106 YRYLARRTNAKFNQIILRRLFMSRINRPPISLSRLAR--HMKKPTREGLIAVVVGTVSND 279
           YR+LARRT+++FN+ IL+RLF S+ NRPPIS+S++A     K  + EG   V+VGTV++D
Sbjct: 32  YRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDD 91

Query: 280 VRLYTVPKMTVAALHVTEKARARILAAGGEMLTCDQLALR 399
            RL TVPK++VAAL  T+ ARARIL AGGE+LT DQLALR
Sbjct: 92  ERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALR 131



 Score = 29.1 bits (62), Expect = 0.31
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 8  VGIDINHKHDRKVRRTEVKSQDVYLR 85
          +GIDI   H RK +R++  S++VYL+
Sbjct: 1  MGIDIERHHVRKSQRSKPASENVYLK 26


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  118 bits (284), Expect = 4e-28
 Identities = 58/100 (58%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
 Frame = +1

Query: 106 YRYLARRTNAKFNQIILRRLFMSRINRPPISLSRLAR--HMKKPTREGLIAVVVGTVSND 279
           YR+LARRT+++FN+ IL+RLF S+ NRPPIS+S++A     K  + +    VVVGTV++D
Sbjct: 32  YRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDD 91

Query: 280 VRLYTVPKMTVAALHVTEKARARILAAGGEMLTCDQLALR 399
            R+ TVPK+++AAL  T+ ARARIL AGGE+LT DQLALR
Sbjct: 92  ERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALR 131



 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 8  VGIDINHKHDRKVRRTEVKSQDVYLR 85
          +GIDI   H +K +R++  S++VYL+
Sbjct: 1  MGIDIERHHVKKSQRSKPASENVYLK 26


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 183 PTSDFFVPFGTPHEEAYTRGFDRCSR 260
           P +D F+PF TP  +AY +   R  R
Sbjct: 209 PQTDNFIPFLTPKRQAYGQSSSRADR 234


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +1

Query: 187 PPISLSRLARHMKKPTREGLIAVVVGTVSNDVRLYTVPKMTVAALHVTEKARARILAAGG 366
           PP+  S L   +   T + L   ++  + +  R+ T+PK+  + L  +  +R  +L +GG
Sbjct: 206 PPVDESFLMGSISSDTVDTLHTYLIKALQD--RVLTIPKLCSSNLDCSHYSRVCVLYSGG 263

Query: 367 EMLTCDQLA 393
             + C  LA
Sbjct: 264 --VDCGVLA 270


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 46  SAHRS*VSGCVLENXIV*NWYRYLARRTNAKFNQII 153
           + HR+ V+    E   V + Y YLA  T AK++QII
Sbjct: 309 ATHRAEVADAASE---VHSEYNYLAADTGAKYDQII 341


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 SSQVSVPVLHNXVLKYTS*DLTSV 52
           +S+ SVP LH   L  T+ D+TS+
Sbjct: 143 ASKYSVPELHTTFLPNTNADITSL 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,235
Number of Sequences: 5004
Number of extensions: 33271
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)