Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B09
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 121 3e-28
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 119 9e-28
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 119 1e-27
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 30 0.70
03_02_0032 + 5143223-5143238,5143477-5143526,5144077-5144173,514... 29 2.1
02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385... 29 2.1
11_02_0053 - 7797580-7798731 27 4.9
07_01_0019 + 124594-126477 27 4.9
02_05_1249 - 35240823-35242184 27 4.9
02_03_0371 - 18267986-18268378 27 4.9
01_01_0512 + 3735005-3735580 27 6.5
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 27 8.6
02_01_0384 - 2781362-2782299,2782320-2782428 27 8.6
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 121 bits (291), Expect = 3e-28
Identities = 62/98 (63%), Positives = 74/98 (75%)
Frame = +1
Query: 106 YRYLARRTNAKFNQIILRRLFMSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVR 285
YR+L RRT + FN +ILRRLFMS+ NRPP+SL RL R M+ +E IAV+VGTV++D R
Sbjct: 33 YRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRFMEG--KENQIAVIVGTVTDDKR 90
Query: 286 LYTVPKMTVAALHVTEKARARILAAGGEMLTCDQLALR 399
+Y VP M VAAL TE ARARI+ GGE LT DQLALR
Sbjct: 91 VYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 119 bits (287), Expect = 9e-28
Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 6/104 (5%)
Frame = +1
Query: 106 YRYLARRTNAKFNQIILRRLFMSRINRPPISLSRLARHM--KKPTREGL----IAVVVGT 267
YR+L RRT + FN +IL+RLFMS+ NRPP+S+ RL R M K P R + IAV+VGT
Sbjct: 33 YRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRFMEGKVPDRHAISGDQIAVIVGT 92
Query: 268 VSNDVRLYTVPKMTVAALHVTEKARARILAAGGEMLTCDQLALR 399
V++D R+Y VP M VAAL TE ARARI+ AGGE LT DQLALR
Sbjct: 93 VTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALR 136
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 119 bits (286), Expect = 1e-27
Identities = 60/98 (61%), Positives = 74/98 (75%)
Frame = +1
Query: 106 YRYLARRTNAKFNQIILRRLFMSRINRPPISLSRLARHMKKPTREGLIAVVVGTVSNDVR 285
YR+L RRT + FN +IL+RLFMS+ NRPP+SL RLA+ M+ E IAV+VGTV++D R
Sbjct: 33 YRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKFMEGK-EENNIAVIVGTVTDDKR 91
Query: 286 LYTVPKMTVAALHVTEKARARILAAGGEMLTCDQLALR 399
+ +PKM V AL TE ARARI+ AGGE LT DQLALR
Sbjct: 92 IQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129
>06_03_1313 -
29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 30.3 bits (65), Expect = 0.70
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -3
Query: 318 CGYCHFRNS--VKPHIIGDCANDYSDQTLACRLLHVACQTGQRNRRSVDTAHKQSP 157
C Y H R S V H +C N++ C HV C+ + RRS + AHKQ+P
Sbjct: 658 CSYRHCRESKMVSDHY-KNCINEH------C---HVCCKAKEMLRRSSELAHKQNP 703
>03_02_0032 +
5143223-5143238,5143477-5143526,5144077-5144173,
5145272-5145559,5146161-5146402
Length = 230
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 139 TWHSCV*PSICTSFTQXXSQVHILRLNFGAPNFPVVFMIDVD 14
T+ S V ICT+F SQVH + FGA ++P + +V+
Sbjct: 36 TYASAVEQEICTAFL-FVSQVHGVEYAFGAHDYPSSGVFEVE 76
>02_01_0531 -
3856343-3856373,3856426-3856506,3857972-3858097,
3858196-3858326,3858832-3858855,3859429-3859482,
3859967-3860136,3860322-3860380,3861274-3861390,
3861481-3861611,3861720-3861770,3862305-3862481
Length = 383
Score = 28.7 bits (61), Expect = 2.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 91 IV*NWYRYLARRTNAKFNQIILRRLFMSRINRPPISLSRLARHM--KKPTREGLIAV 255
++ W + RR N +F+ RR ++SR+ ++ ++RH+ K T E L A+
Sbjct: 203 VIKEWTKSGERRGNVRFSHDSKRRPYLSRVEVKAVAEITISRHLSSKGVTPEALAAL 259
>11_02_0053 - 7797580-7798731
Length = 383
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -1
Query: 413 VQWAHRRANWSHVSISPPAAKM-RARAFSVTCSAATVILGTV 291
++W R W V SPP K ARA V V+ G +
Sbjct: 299 MEWLGSRGGWREVGPSPPGLKAGTARAVCVGGGERVVVTGAI 340
>07_01_0019 + 124594-126477
Length = 627
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 231 RLLHVACQTGQRNRRSVDTAHKQSP*DDLVELGIRASS 118
+LL + TG++ RRSV +P + E+G A+S
Sbjct: 499 QLLQYSASTGEQQRRSVYAEEMLTPAESFSEMGTMAAS 536
>02_05_1249 - 35240823-35242184
Length = 453
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 298 PKMTVAALHVT----EKARARILAAGGEMLTCDQLALRCAH-WT 414
PK+ +A+ +T +K + R+ A+GG + C + CA+ WT
Sbjct: 240 PKLFMASFTLTRDSIDKLKQRVTASGGGGVHCSAFTVACAYAWT 283
>02_03_0371 - 18267986-18268378
Length = 130
Score = 27.5 bits (58), Expect = 4.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 5 EVGIDINHKHDRKVRRTEVKSQDV 76
E G+++NH+ D ++R E +QDV
Sbjct: 43 EHGVEVNHRGDEEIRVPEGPNQDV 66
>01_01_0512 + 3735005-3735580
Length = 191
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 165 VYEPYQPTSDFFVPFGTPHEEAYTRGFDRCSR 260
VYEP T F +G P A GF+RC R
Sbjct: 153 VYEPTSDTPSTFY-YGDPLPNAVWYGFNRCPR 183
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 229 PTREGLIAVVVGTVSN-DVRLYTVPKMTVAALHVTEKARARILAAGG 366
PT E + +V +SN D T+ KMTV + A R+L GG
Sbjct: 95 PT-ENICKIVKAIISNSDYLSMTMKKMTVIHISQVNAANERMLGGGG 140
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 413 VQWAHRRANWSHVSISPPA 357
V+ A RR WS +S SPPA
Sbjct: 278 VEEARRRRRWSPISSSPPA 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,940
Number of Sequences: 37544
Number of extensions: 237209
Number of successful extensions: 588
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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