Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B08
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 42 1e-05
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 38 2e-04
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 33 0.009
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 30 0.063
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 29 0.083
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 29 0.083
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 29 0.11
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac... 29 0.15
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 0.19
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 28 0.25
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 28 0.25
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 27 0.59
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 27 0.59
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 27 0.59
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 27 0.59
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 0.59
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 26 0.78
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 1.0
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 1.4
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 1.4
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 25 1.4
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 1.8
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 1.8
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 25 1.8
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 2.4
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 24 3.1
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 24 4.1
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 24 4.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 23 5.5
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 23 5.5
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 23 7.2
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 23 7.2
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 23 7.2
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 23 7.2
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 23 7.2
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 23 7.2
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 23 7.2
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar... 23 9.6
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 23 9.6
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 41.9 bits (94), Expect = 1e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINIGNGXXXXXXXXXXXXRHP 267
KY++ +KIG GSFGDIYL N+ +G +HP
Sbjct: 10 KYRIGRKIGSGSFGDIYLGTNVVSGEEVAIKLESTRAKHP 49
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 38.3 bits (85), Expect = 2e-04
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINIGNGXXXXXXXXXXXXRH 264
KY++ +KIG GSFG IYL +N NG RH
Sbjct: 11 KYRIGRKIGSGSFGQIYLGLNTVNGEQVAVKLEPLKARH 49
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 32.7 bits (71), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 118 NSRKEFVAAGKYKVLKKIGGGSFGDIYLA 204
NS E + YK+LK I G+FG +YLA
Sbjct: 578 NSAPEHPSINDYKILKPISKGAFGSVYLA 606
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 29.9 bits (64), Expect = 0.063
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYLA 204
Y V++K+G G+FG +YLA
Sbjct: 36 YNVVRKVGDGTFGSVYLA 53
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 29.5 bits (63), Expect = 0.083
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 115 MNSRKEFVAAGKYKVLKKIGGGSFGDIYLAINIGN 219
MNS+ V Y+V +KIG GSFG I+ +N+ N
Sbjct: 1 MNSQTSVVGV-HYRVGRKIGEGSFGVIFDGMNLLN 34
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 29.5 bits (63), Expect = 0.083
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINIGNG 222
KYK+L+ IG GSFG IY + +G
Sbjct: 3 KYKILECIGHGSFGRIYKVQRLKDG 27
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 29.1 bits (62), Expect = 0.11
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYLAINIGN 219
Y+V KKIG GSFG ++ +N+ N
Sbjct: 15 YRVGKKIGEGSFGMLFQGVNLIN 37
>SPBC8D2.19 |mde3||serine/threonine protein kinase
Mde3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 559
Score = 28.7 bits (61), Expect = 0.15
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLA 204
+Y V +K+G GSFG +YLA
Sbjct: 20 RYLVKQKLGDGSFGTVYLA 38
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.3 bits (60), Expect = 0.19
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 145 GKYKVLKKIGGGSFGDIYLAINI 213
G Y++ +G GSFG +YLA ++
Sbjct: 29 GTYRIESVVGEGSFGKVYLAAHL 51
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 27.9 bits (59), Expect = 0.25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 169 IGGGSFGDIYLAINIGNG 222
IG GSFG +YL +N +G
Sbjct: 400 IGSGSFGQVYLGMNASSG 417
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.9 bits (59), Expect = 0.25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 169 IGGGSFGDIYLAINIGNG 222
IG GSFG +Y A+N+ G
Sbjct: 1126 IGSGSFGTVYRAVNLDTG 1143
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 0.59
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINIGNG 222
+Y +L+K+G G+F ++Y AI+ G
Sbjct: 123 QYTLLQKMGDGAFSNVYKAIHNRTG 147
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 26.6 bits (56), Expect = 0.59
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 142 AGKYKVLKKIGGGSFGDIYLA 204
A Y +L+K+G GSFG ++ A
Sbjct: 6 ANSYTLLRKLGSGSFGVVWKA 26
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 0.59
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYLAINIGN 219
YKV ++IG GSFG I+ N+ N
Sbjct: 12 YKVGRRIGEGSFGVIFEGTNLLN 34
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 26.6 bits (56), Expect = 0.59
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINIGN 219
+Y++ K +G G F +YL N+ N
Sbjct: 31 RYRIQKLLGEGGFAFVYLVQNVSN 54
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.6 bits (56), Expect = 0.59
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 103 MASFMNSRKEFVAAGKYKVLKKIGGGSFGDIYLA 204
++S ++S K + Y+++K I G+FG +YL+
Sbjct: 548 LSSNISSGKGTPSIQDYEIIKPISKGTFGTVYLS 581
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 26.2 bits (55), Expect = 0.78
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 145 GKYKVLKKIGGGSFGDIYLAINIGNG 222
G + + K IG GS G + L +NI G
Sbjct: 51 GNWIIKKTIGAGSMGKVKLVVNILTG 76
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 1.0
Identities = 8/42 (19%), Positives = 23/42 (54%)
Frame = +3
Query: 27 IQKCVI*DFELYTFIIVRLFILIHKNGFIYEFTKRICGRWKI 152
I+ C++ E +++++ F+ H++ T R+C ++ +
Sbjct: 1185 IKDCIVESNESMNYLLLKRFLFTHESTLRNSVTARMCNQYLV 1226
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 1.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINI 213
KY++++ +G G+F +Y A +I
Sbjct: 64 KYQLIENLGDGAFSQVYKAYSI 85
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 1.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYLAINIGNG 222
Y++++KIG G+F +Y A ++ G
Sbjct: 68 YRLIEKIGEGTFSSVYKAEDLHYG 91
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.4 bits (53), Expect = 1.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 169 IGGGSFGDIYLAINIGNG 222
+G G+FG +Y +NI NG
Sbjct: 15 LGKGAFGAVYRGLNIKNG 32
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 1.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYLAINIG 216
Y+ KIG G+ GD+Y A +G
Sbjct: 386 YRNFVKIGQGASGDVYSARQVG 407
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 1.8
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIY 198
Y +++K+G G+FG++Y
Sbjct: 36 YHLMEKLGEGTFGEVY 51
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 1.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 145 GKYKVLKKIGGGSFGDIYLA 204
G +++ K +G G FG +YLA
Sbjct: 87 GMFEIGKPLGKGKFGRVYLA 106
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 2.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 251 TDSTLTATSSPLPMLIAKYMSPNDPPPIFFSTLYFPAAT 135
T+S T ++ LP + P+ P +F LY PAAT
Sbjct: 110 TNSMETNFNNSLPAVGKTNTFPSQVPNMFGPPLYHPAAT 148
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 24.2 bits (50), Expect = 3.1
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = -2
Query: 236 TATSSPLPMLIAKYMSPNDPPPIFFSTLY------FPAATNSFREFINEAIFMYQYK*SH 75
+AT +PL I+ PIFFS LY F +T + EF N A F+ Y+
Sbjct: 1402 SATENPLESGISYTRGAFSSIPIFFSALYQSVRSLFIRSTPTNGEFEN-AAFLQNYEIDD 1460
Query: 74 NNE 66
++E
Sbjct: 1461 DDE 1463
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 257 AFTDSTLTATSSPLPMLIAKYMSPNDPP 174
A T S++T+ S P+ A PN PP
Sbjct: 37 ANTPSSVTSNSKPVASSTAAKKDPNAPP 64
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 23.8 bits (49), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 236 TATSSPLPMLIAKYMSPNDPPPIFFSTLYFPA 141
++T S PM + Y+SP+ P FS FP+
Sbjct: 172 SSTWSQSPMQSSLYVSPSSQPLDRFSPASFPS 203
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.4 bits (48), Expect = 5.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 142 AGKYKVLKKIGGGSFGDIYLAINIGNG 222
A +Y+V+ +G GSFG + I+ G
Sbjct: 696 AYRYEVVDFLGKGSFGQVLRCIDYETG 722
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 23.4 bits (48), Expect = 5.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 160 LKKIGGGSFGDIYL 201
LK IG G+FG +YL
Sbjct: 269 LKLIGKGTFGQVYL 282
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 69 IIVRLFILIHKNGFIYEFTK 128
+IV+ ++ K+G+I EFT+
Sbjct: 33 VIVKFLTVMQKHGYIDEFTE 52
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYLAINIG 216
+ V K+G G+ G +YLA +G
Sbjct: 309 FNVKHKLGQGASGSVYLAKVVG 330
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 148 KYKVLKKIGGGSFGDIYLAINI 213
KY+V + +GGG++ + A++I
Sbjct: 30 KYRVGRVLGGGTYATVREAVHI 51
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.0 bits (47), Expect = 7.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 145 GKYKVLKKIGGGSFGDIYLAINIGNG 222
G Y + K IG GS G + +A ++ G
Sbjct: 123 GNYVLGKTIGAGSMGKVKVAHHLKTG 148
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 69 IIVRLFILIHKNGFIYEFTK 128
+IV+ ++ K+G+I EFT+
Sbjct: 33 VIVKFLTVMQKHGYIDEFTE 52
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 23.0 bits (47), Expect = 7.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 151 YKVLKKIGGGSFGDIYL 201
+ L+ IG G+FG +YL
Sbjct: 302 FTALRLIGKGTFGQVYL 318
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 245 STLTATSSPLPMLIAKYMSPNDPPPI 168
+T T SP+P +IA + PP+
Sbjct: 547 NTTTIAPSPVPTIIAPALPSTPAPPL 572
>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 22.6 bits (46), Expect = 9.6
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = +1
Query: 172 GGGSFGDIY 198
GGG+FGD+Y
Sbjct: 157 GGGNFGDLY 165
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 145 GKYKVLKKIGGGSFGDIYLA 204
G Y + + +G GSFG + LA
Sbjct: 32 GPYIIRETLGEGSFGKVKLA 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,225
Number of Sequences: 5004
Number of extensions: 21139
Number of successful extensions: 77
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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