Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B07
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 38 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.007
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 33 0.011
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 32 0.020
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 32 0.020
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.035
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 31 0.035
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.046
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 31 0.046
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy... 29 0.19
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.19
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 0.75
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 27 0.99
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 1.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 2.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 3.0
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 25 3.0
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 25 3.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 5.3
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 7.0
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 23 9.2
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 23 9.2
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos... 23 9.2
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.9 bits (84), Expect = 4e-04
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +1
Query: 19 KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 153
K N + +P FAFI FEN A++A +++NG G TLKVE
Sbjct: 55 KKNKSTDSKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVE 99
Score = 28.3 bits (60), Expect = 0.33
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 10 KYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
K+G++ S +A P G+ F+ F + EA A + +NG+ L V + KR+
Sbjct: 443 KFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKRE 501
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.007
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 10 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
KYGK+ + V N G F++FEN AE A + ++ G T+K I + D
Sbjct: 540 KYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPETD 593
Score = 29.9 bits (64), Expect = 0.11
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
GF +I++ N A +A MNG ++ G ++V
Sbjct: 381 GFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 33.1 bits (72), Expect = 0.011
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 7 GKYGKLNSVWV--ALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 168
G YGK+ V L G AF+ F+NL+ A A + G + G + ++ S+ +
Sbjct: 51 GSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSK 106
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.3 bits (70), Expect = 0.020
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 7 GKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
G+YG + + + + G AF+ +EN+Q+A AC ++G + L V
Sbjct: 33 GRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGYNFMDRYLVV 82
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.3 bits (70), Expect = 0.020
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = +1
Query: 7 GKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 153
G YG+L SV V + GFAF EF +EA +A A+ +LG L ++
Sbjct: 742 GAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQ 794
Score = 31.9 bits (69), Expect = 0.026
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 165
GF F+EF++ A A AMNG + G L++++S +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQ 702
Score = 27.1 bits (57), Expect = 0.75
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +1
Query: 7 GKYGKLNSVWVAL-----NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 168
G +G+L V + + NP GFA+I+F + +A A ++ G L V ++ R
Sbjct: 344 GPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAKAR 402
Score = 24.2 bits (50), Expect = 5.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
FAFI F+N ++A+ A +N + T ++E+ R D
Sbjct: 48 FAFIGFKNEEDADKAIRYLN--KSYVETSRIEVHRALD 83
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.5 bits (68), Expect = 0.035
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
GF F+E E+ ++A D + G E +G+ + VE +R
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPAR 73
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 31.5 bits (68), Expect = 0.035
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
GF F EF + Q+ E AC +N +++ G ++V
Sbjct: 53 GFGFCEFLHEQDVEYACQILNQVKLFGKPIRV 84
Score = 29.5 bits (63), Expect = 0.14
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
G+ F+ +++ + A+ A AMN ++ + V + KR+G
Sbjct: 141 GYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREG 180
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 31.1 bits (67), Expect = 0.046
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
GFAF+ ++ + AE+A +++NG E+ G + V+ + +D
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 31.1 bits (67), Expect = 0.046
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNG--IEMLGATLKVEISRK 165
FAF+E+E+ ++AEDA ++G +E G L+VE +++
Sbjct: 49 FAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQ 86
>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 29.1 bits (62), Expect = 0.19
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 120
YGKL SV +N P A + F +L+ A A + M+G
Sbjct: 186 YGKLRSV--TINSPTSATLSFSSLRSATSALNCMHG 219
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.1 bits (62), Expect = 0.19
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
GF F EF+N +AE A S ++G + G L + +
Sbjct: 352 GFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 0.75
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 43 LNPPGFAFIEFENLQEAEDACSAMNG 120
L P G AF+ F N ++ + A +NG
Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNG 111
Score = 27.1 bits (57), Expect = 0.75
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 153
GF F+ F N ++ A MNG ++ TL V+
Sbjct: 259 GFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVK 291
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 26.6 bits (56), Expect = 0.99
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 4 RGKYGKLNSVW-----VALNPPGFAFIEFENLQEAEDACSAMN 117
RG+Y KLN VW +AL P I +QE+E ++ N
Sbjct: 214 RGEYTKLNGVWRIQFGIALFPAVIVLIPRLRMQESEQFKNSKN 256
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 134 PNISMPFMALHASSASCKFSNSMN-AKPG 51
P + PF A+HA+++S + N+ N PG
Sbjct: 384 PKTARPFAAIHANASSTQLRNTENITHPG 412
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 2.3
Identities = 9/37 (24%), Positives = 21/37 (56%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 165
G+A++ F N+++ E A +N + G ++ S++
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
+AFIEF+N + E A M + + + + V+ S+
Sbjct: 287 YAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQ 321
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
GF ++FEN +A + +NG G L++
Sbjct: 321 GFGVVQFENENDAASSIEKLNGYRYGGRPLQL 352
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 156
+AFIEFE+L A M+ + G L+ ++
Sbjct: 148 YAFIEFESLDVANVVAETMHNYLLYGKLLQCKV 180
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
G+A IE+ L++A+ A N + +L L+V+ +
Sbjct: 52 GYALIEYATLEQAQKAVDEKN-LSLLDEKLEVDFA 85
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 23.8 bits (49), Expect = 7.0
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMN 117
+AF+EF+ ++A++A MN
Sbjct: 48 YAFVEFDEPEDAKEAMENMN 67
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -1
Query: 119 PFMALHASSASCKFSNSMNAKPGGFNATHTEFNF 18
P +A+ ++ K N+ N P G + HT ++
Sbjct: 726 PTLAVSGIDSTVKIFNTENTPPSGCSRNHTSNSY 759
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 128 ISMPFMALHASSASCKFSNSMNAKPGG 48
+++P MAL C+F S KPGG
Sbjct: 487 LAIPEMALPPCHIFCQFYVSEPCKPGG 513
>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 233 SVVRGADSITHTVVVAEAVADHTTAVVTDMALV 331
+V G DS + V+ EA+ D A++ D L+
Sbjct: 242 AVSGGVDSTVASKVLKEAIGDRFHAIMVDNGLL 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,783
Number of Sequences: 5004
Number of extensions: 14922
Number of successful extensions: 57
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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