Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B07
(332 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 60 4e-10
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 60 4e-10
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 60 4e-10
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 46 7e-06
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 46 7e-06
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 46 7e-06
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 44 2e-05
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 44 2e-05
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 40 3e-04
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 39 8e-04
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 39 8e-04
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 39 8e-04
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 39 0.001
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 39 0.001
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 39 0.001
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 39 0.001
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 39 0.001
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 38 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 38 0.002
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 37 0.003
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 37 0.004
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 36 0.005
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 36 0.007
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 36 0.007
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 34 0.021
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 34 0.021
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 34 0.028
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 34 0.028
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 34 0.028
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.050
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.066
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.066
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 32 0.087
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 32 0.087
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 32 0.087
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 32 0.087
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 32 0.11
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.15
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 30 0.35
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 0.46
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 0.46
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 0.61
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 0.61
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 28 1.4
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 28 1.4
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 28 1.9
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 1.9
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 27 2.5
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 27 2.5
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 27 2.5
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 27 3.3
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 27 3.3
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 27 3.3
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 27 3.3
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 27 4.3
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 4.3
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 26 5.7
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 26 5.7
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 26 5.7
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 26 5.7
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 26 5.7
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 26 7.5
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 26 7.5
Z81128-10|CAB03395.3| 467|Caenorhabditis elegans Hypothetical p... 25 10.0
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z81033-3|CAD36479.1| 467|Caenorhabditis elegans Hypothetical pr... 25 10.0
Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical pr... 25 10.0
U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical pr... 25 10.0
AL023824-1|CAD36497.1| 467|Caenorhabditis elegans Hypothetical ... 25 10.0
AF487547-1|AAL93258.1| 467|Caenorhabditis elegans ARID DNA bind... 25 10.0
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 25 10.0
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 25 10.0
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 25 10.0
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 60.1 bits (139), Expect = 4e-10
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = +1
Query: 10 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
++G++ VWVA PPGFAF+E++++++AEDA A++G + G +VE+S
Sbjct: 25 RFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 60.1 bits (139), Expect = 4e-10
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = +1
Query: 10 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
++G++ VWVA PPGFAF+E++++++AEDA A++G + G +VE+S
Sbjct: 25 RFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 60.1 bits (139), Expect = 4e-10
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = +1
Query: 10 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
++G++ VWVA PPGFAF+E++++++AEDA A++G + G +VE+S
Sbjct: 25 RFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 46.0 bits (104), Expect = 7e-06
Identities = 20/55 (36%), Positives = 37/55 (67%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
YGK+N++ + GFAF++FE+ ++AEDAC ++G M G+++++ + R P
Sbjct: 25 YGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKP 76
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 46.0 bits (104), Expect = 7e-06
Identities = 20/55 (36%), Positives = 37/55 (67%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
YGK+N++ + GFAF++FE+ ++AEDAC ++G M G+++++ + R P
Sbjct: 25 YGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKP 76
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 46.0 bits (104), Expect = 7e-06
Identities = 20/55 (36%), Positives = 37/55 (67%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
YGK+N++ + GFAF++FE+ ++AEDAC ++G M G+++++ + R P
Sbjct: 25 YGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKP 76
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 44.8 bits (101), Expect = 2e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +1
Query: 16 GKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEI 156
G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 52 GPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 KYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
KYG++ V + P FAF+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 31 KYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 10 KYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
KYG++ V + P FAF+EFE+ ++AEDA A +G E G ++VE +R
Sbjct: 31 KYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
YGKL+ V + GF F++F++ ++A+DA +NG E+ G + +E R++ G
Sbjct: 25 YGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVG 75
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
YG++ V L GF F+EF++ ++AEDA +NG E+ G + ++ S+ R G
Sbjct: 26 YGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGG 76
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
YG++ V L GF F+EF++ ++AEDA +NG E+ G + ++ S+ R G
Sbjct: 26 YGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGG 76
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
YG++ V L GF F+EF++ ++AEDA +NG E+ G + ++ S+ R G
Sbjct: 26 YGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGG 76
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
F F+ +EN Q A +A SAMNG ++ LKV++ R P
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 417
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
F F+ +EN Q A +A SAMNG ++ LKV++ R P
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 581
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
F F+ +EN Q A +A SAMNG ++ LKV++ R P
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 581
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
F F+ +EN Q A +A SAMNG ++ LKV++ R P
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 510
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
F F+ +EN Q A +A SAMNG ++ LKV++ R P
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDRGNP 581
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Frame = +1
Query: 7 GKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
GK G++ +++A + P GFAF+ FE+ +A A + +N I M LKVE +R
Sbjct: 197 GKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEWTR 253
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 16 GKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 165
G++N+V + + P GFAFIEF A+ A MNG E G L+V ++ K
Sbjct: 29 GQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 49 PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 153
P G+ FIEF ++Q AE A +NG E+ G L+V+
Sbjct: 58 PKGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVD 92
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
GFA++ FEN Q+ A S +NG + LKV +++RD
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRD 92
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 49 PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
P GFAF+EF A+ A NG++ G L+V +++ R+
Sbjct: 44 PRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNRN 84
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
GFA I F N +A+ +C +N E+ G +++ I ++ P
Sbjct: 168 GFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAP 208
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 35.9 bits (79), Expect = 0.007
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
GFA I F N +A+ +C +N E+ G +++ I ++ P
Sbjct: 313 GFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQESQAP 353
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.021
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
F F+ ++N+ ++ A +AMNG ++ LKV++ R R+
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRN 509
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 34.3 bits (75), Expect = 0.021
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
F F+ ++N+ ++ A +AMNG ++ LKV++ R R+
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRN 509
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 33.9 bits (74), Expect = 0.028
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 49 PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 165
P GFAF+EF A+ A +NG+ G L+V + K
Sbjct: 46 PRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.028
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 10 KYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 153
+YGK+ ++ + L+ G+A +E+E +EA +A N ++LG +KV+
Sbjct: 77 EYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVD 129
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 33.9 bits (74), Expect = 0.028
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
GF F+EF+ ++A A MN E+ G T++V +R
Sbjct: 53 GFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR 88
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 33.1 bits (72), Expect = 0.050
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 1 ARGKYGKLNSVW-VALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 168
A GK KL V A P G+AFIE+ + E A +GI++ G L V+ R R
Sbjct: 126 AYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDYERGR 182
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.066
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
GFAFI F + + ++ A AMNG + + V + KRD
Sbjct: 143 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 181
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 37 VALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
V N GF F+EF ++A+ A +N I++ G +KV
Sbjct: 49 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 86
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.066
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
GFAFI F + + ++ A AMNG + + V + KRD
Sbjct: 153 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 191
Score = 31.5 bits (68), Expect = 0.15
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 37 VALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
V N GF F+EF ++A+ A +N I++ G +KV
Sbjct: 59 VTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKV 96
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 10 KYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
K+G + S V GF F+ F N +EAE A A++ + G LK+ + R
Sbjct: 235 KFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 10 KYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
K+G + S V GF F+ F N +EAE A A++ + G LK+ + R
Sbjct: 175 KFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 228
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 10 KYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
K+G + S V GF F+ F N +EAE A A++ + G LK+ + R
Sbjct: 172 KFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 225
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 32.3 bits (70), Expect = 0.087
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 10 KYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
K+G + S V GF F+ F N +EAE A A++ + G LK+ + R
Sbjct: 235 KFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
G+AF+ N EA +A ++NG + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
G+ F+ + ++A A S+ NG+ + T+KV +R
Sbjct: 84 GYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYAR 119
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.15
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
G+ ++E++NL++AE + M+G ++ G + VE++
Sbjct: 176 GYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMT 210
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 30.3 bits (65), Expect = 0.35
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEIS 159
GF F++F A+++C ++NG+ L V ++
Sbjct: 120 GFGFVQFNEAGSADESCRSLNGMSWKACCLDVHLA 154
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 29.9 bits (64), Expect = 0.46
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 61 AFIEFENLQEAEDACSAMNGIEMLG--ATLKVEISR 162
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.9 bits (64), Expect = 0.46
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 61 AFIEFENLQEAEDACSAMNGIEMLG--ATLKVEISR 162
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
GF ++EF NL +A + MN ++ G L+V
Sbjct: 249 GFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
FAF+E+E + A A +MNG + G LKV
Sbjct: 145 FAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
GF ++EF NL +A + MN ++ G L+V
Sbjct: 249 GFGYLEFNNLTSQSEAIAGMNMFDLGGQYLRV 280
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
FAF+E+E + A A +MNG + G LKV
Sbjct: 145 FAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 28.3 bits (60), Expect = 1.4
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +1
Query: 46 NPPGFAFIEFENLQEAEDACSAMNGIEM----LGAT-LKVEISRK--RDGP 177
N G+A++ F+N AE A +MNG M LG T +K E+ K R GP
Sbjct: 71 NHKGWAYVGFDNKAVAEIAAESMNGYLMFEQRLGCTVMKPELIPKAMRHGP 121
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 10 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGA-TLKVEISRK 165
++ L + + N PG AF+EF+ A A + +N ++ T++V+ ++K
Sbjct: 154 QFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 7 GKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
G K ++ LN P +AF+EF + +A A + NG E+L + V
Sbjct: 64 GAVMKAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNGRELLEKEMHV 110
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 10 KYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
++G +N V G+AF++FE + A A MN ++ G ++ + D
Sbjct: 277 RFGPINEVRT-FKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGD 329
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLK 147
GF ++EF NL +A + MN ++ G L+
Sbjct: 249 GFGYLEFNNLTSQSEAIAGMNMFDLGGQYLR 279
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 58 FAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
FAF+E+E + A A +MNG + G LKV
Sbjct: 145 FAFVEYEVPEAALLAQESMNGQMLGGRNLKV 175
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 168
GF F+ +N +A+ A + NG + G ++V ++ +R
Sbjct: 22 GFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 168
GF F+ +N +A+ A + NG + G ++V ++ +R
Sbjct: 140 GFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKR 168
GF F+ +N +A+ A + NG + G ++V ++ +R
Sbjct: 140 GFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1952 LSIVGGADTVLGTVVIHEVYSDGAAA 1977
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1974 LSIVGGADTVLGTVVIHEVYSDGAAA 1999
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1765 LSIVGGADTVLGTVVIHEVYSDGAAA 1790
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 2072 LSIVGGADTVLGTVVIHEVYSDGAAA 2097
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1952 LSIVGGADTVLGTVVIHEVYSDGAAA 1977
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1974 LSIVGGADTVLGTVVIHEVYSDGAAA 1999
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1765 LSIVGGADTVLGTVVIHEVYSDGAAA 1790
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 2072 LSIVGGADTVLGTVVIHEVYSDGAAA 2097
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1783 LSIVGGADTVLGTVVIHEVYSDGAAA 1808
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 230 LSVVRGADSITHTVVVAEAVADHTTA 307
LS+V GAD++ TVV+ E +D A
Sbjct: 1743 LSIVGGADTVLGTVVIHEVYSDGAAA 1768
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 7 GKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
GK+G + + V G AF+ +E++ +A+ AC ++G + L V
Sbjct: 40 GKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSGYNVSNRYLVV 89
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
YG + V + +AF+ +E + A A MNG EM G ++ R + P
Sbjct: 260 YGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQAVP 313
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/50 (30%), Positives = 19/50 (38%)
Frame = +1
Query: 28 SVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDGP 177
S+ A P FEN A A S M + G T + S+ GP
Sbjct: 1004 SISAATTTPNVVVDAFENSSPAAPAVSTMEEVTPSGTTASISQSQPTPGP 1053
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 10 KYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
K+G++ S V + P GF F+ F + A A +N + G K+ + R
Sbjct: 260 KFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 26.2 bits (55), Expect = 5.7
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 10 KYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
K+G++ S V + P GF F+ F + A A +N + G K+ + R
Sbjct: 260 KFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCR 314
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
G+ F+ + +EAE A MNG + T++ + ++ G
Sbjct: 64 GYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 103
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
+G++ V + G+AF++F+N A A MN ++ G ++ + D
Sbjct: 150 FGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGD 201
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
G+ F+ + +EAE A MNG + T++ + ++ G
Sbjct: 74 GYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 113
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
+G++ V + G+AF++F+N A A MN ++ G ++ + D
Sbjct: 160 FGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGD 211
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
G+ F+ + +EAE A MNG + T++ + ++ G
Sbjct: 177 GYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 216
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 7 GKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
G K ++ N P +AF+EF + +A A MN +L +KV
Sbjct: 70 GSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNKRLLLDREMKV 116
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
+G++ V + G+AF++F+N A A MN ++ G ++ + D
Sbjct: 263 FGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGD 314
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 55 GFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRDG 174
G+ F+ + +EAE A MNG + T++ + ++ G
Sbjct: 145 GYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPG 184
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 13 YGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRKRD 171
+G++ V + G+AF++F+N A A MN ++ G ++ + D
Sbjct: 231 FGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGD 282
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +1
Query: 10 KYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGIEMLGATLKV 150
KYG+++ V V ++ GFA +EF + A A SA++G G + +
Sbjct: 301 KYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 49 PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVE 153
P GF F + L A MN + GATLKVE
Sbjct: 277 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLKVE 311
>Z81128-10|CAB03395.3| 467|Caenorhabditis elegans Hypothetical
protein T23D8.8 protein.
Length = 467
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 143 RVAPNISMPFMALHASSASCKFSNS 69
R AP+ +PF HA+SA+ N+
Sbjct: 296 RTAPSFPLPFQLPHAASAAATMLNN 320
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 46 NPPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISR 162
+P GFA++EF + ++A AM + G +KV+ R
Sbjct: 117 HPKGFAYVEFTEKEGMQNAL-AMTDSLLRGRQIKVDPKR 154
>Z81033-3|CAD36479.1| 467|Caenorhabditis elegans Hypothetical
protein T23D8.8 protein.
Length = 467
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 143 RVAPNISMPFMALHASSASCKFSNS 69
R AP+ +PF HA+SA+ N+
Sbjct: 296 RTAPSFPLPFQLPHAASAAATMLNN 320
>Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical
protein F49E11.7 protein.
Length = 402
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 49 PPGFAFIEFENLQEAEDACSAMNGIEMLGATLKVEISRK 165
P GF F + L A MN + GATL+VE K
Sbjct: 296 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLRVETDGK 334
>U23523-4|AAC46557.1| 83|Caenorhabditis elegans Hypothetical
protein F53A9.2 protein.
Length = 83
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 322 HIRHHCGCMVGHRLRHHH 269
H HH G GH HHH
Sbjct: 63 HHHHHHGHHFGHHHHHHH 80
>AL023824-1|CAD36497.1| 467|Caenorhabditis elegans Hypothetical
protein T23D8.8 protein.
Length = 467
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 143 RVAPNISMPFMALHASSASCKFSNS 69
R AP+ +PF HA+SA+ N+
Sbjct: 296 RTAPSFPLPFQLPHAASAAATMLNN 320
>AF487547-1|AAL93258.1| 467|Caenorhabditis elegans ARID DNA binding
protein CFI-1 protein.
Length = 467
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 143 RVAPNISMPFMALHASSASCKFSNS 69
R AP+ +PF HA+SA+ N+
Sbjct: 296 RTAPSFPLPFQLPHAASAAATMLNN 320
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 1 ARGKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 120
A G++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 270 AFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 1 ARGKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 120
A G++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 270 AFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 1 ARGKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 120
A G++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 247 AFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.135 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,660,685
Number of Sequences: 27780
Number of extensions: 85478
Number of successful extensions: 279
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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