Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B06
         (241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    24   3.1  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    23   4.1  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    23   7.1  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    22   9.4  

>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 231 IYIHQVSSLSVIQCKYRNTKPSKMTHNI 148
           +Y+H VS  +++   +    P  MTH++
Sbjct: 53  LYLHPVSFSAILLLVFLTMMPISMTHDV 80


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 93  NIMLKMSFTAD----LHVPSKIKCYVSSLTVLYFCIYTGLQITS*P 218
           N+   ++ TAD      +PS + C +SSLT   F   +G +I++ P
Sbjct: 22  NLYCNLTQTADNILNFEIPSGVSCQLSSLTSSNFA--SGCKISAMP 65


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 126 LHVPSKIKCYVSSLTVLYFC 185
           +H  ++ +C+V S  ++ FC
Sbjct: 169 MHASTEFRCFVKSKRLIAFC 188


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 213 SSLSVIQCKYRNTKPSKMTHN 151
           S  + +QC YR+   ++M HN
Sbjct: 32  SVYAALQCGYRHIDSAQMYHN 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,545
Number of Sequences: 5004
Number of extensions: 10527
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)