Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B06
         (241 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883...    27   2.1  
07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903     27   2.1  
05_05_0345 - 24237991-24238868,24238956-24239307                       26   3.7  
03_05_1038 - 29879965-29880492                                         26   3.7  
01_06_0944 + 33211652-33212427,33212492-33212660,33212825-332129...    26   4.9  
12_02_0351 - 17829874-17830005,17830250-17830267,17830544-178306...    25   6.5  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    25   6.5  
02_04_0421 - 22756903-22757384,22757585-22758047                       25   8.5  

>08_01_0896 +
           8830912-8830984,8831088-8832389,8832502-8832756,
           8832908-8833011
          Length = 577

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 92  FLQATGRISGGCEGAGA 42
           F Q TGR SG C+ AGA
Sbjct: 519 FYQTTGRASGSCDFAGA 535


>07_03_0747 - 21184839-21184939,21185078-21185338,21185445-21186903
          Length = 606

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 92  FLQATGRISGGCEGAGA 42
           F Q TGR SG C+ AGA
Sbjct: 549 FYQTTGRASGSCDFAGA 565


>05_05_0345 - 24237991-24238868,24238956-24239307
          Length = 409

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 3   TRKTSNIREGREPRPRALASAADATRRL*KNIMLKMS 113
           +R    + E + PR +A   AADATR   KN  L +S
Sbjct: 205 SRSRDGVGEDQPPRSQAELLAADATRAGIKNRSLPLS 241


>03_05_1038 - 29879965-29880492
          Length = 175

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 68 SGGCEGAGARLAAFSNVTRFPR 3
          +GG  G G  +AAFS VT  PR
Sbjct: 19 AGGGGGGGGAVAAFSTVTPTPR 40


>01_06_0944 +
           33211652-33212427,33212492-33212660,33212825-33212936,
           33213061-33213159,33213237-33213394,33214911-33215062,
           33215162-33215249,33215399-33215476,33215516-33215690,
           33216701-33217002
          Length = 702

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 98  YVFLQATGRISGGCEGAGARLAA 30
           Y  + A+G +SG C GAG R AA
Sbjct: 249 YSSIPASGMVSGLCLGAGQREAA 271


>12_02_0351 -
           17829874-17830005,17830250-17830267,17830544-17830672,
           17831037-17831336,17831447-17831675,17831762-17831989,
           17832380-17832645
          Length = 433

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 102 LKMSFTADLHVPSKIKCYVSSLTVLY 179
           L   +++DLH+  +  CY+S LT  Y
Sbjct: 76  LSALYSSDLHLQIRPNCYLSRLTHTY 101


>11_02_0051 +
           7776312-7780228,7780627-7780695,7781920-7781979,
           7782225-7782324,7782720-7782801,7782928-7782940,
           7783621-7783681
          Length = 1433

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 141 KIKCYVSSLTVLYFCIYTGLQITS*PDEYKYL 236
           ++ C +  L VL  C Y   ++    DE+K+L
Sbjct: 584 EVFCNMKKLRVLLLCFYNSRKLPQSIDEFKHL 615


>02_04_0421 - 22756903-22757384,22757585-22758047
          Length = 314

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 197 SSVNTEIQNRQR*HITFNFRRNMKVRCE 114
           +SV T I+NR R H+T    RN+ V C+
Sbjct: 128 ASVATSIENRNRHHVT---TRNVLVVCD 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,898,361
Number of Sequences: 37544
Number of extensions: 73724
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)