Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B06
         (241 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40412-2|ABN43089.1|  160|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U40412-2|ABN43089.1|  160|Caenorhabditis elegans Hypothetical
           protein F46G11.6 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/64 (28%), Positives = 26/64 (40%)
 Frame = +3

Query: 15  SNIREGREPRPRALASAADATRRL*KNIMLKMSFTADLHVPSKIKCYVSSLTVLYFCIYT 194
           S+   G +P P            L KN+     F A +  P  I+   SS  V+ FC+ T
Sbjct: 86  SSDEPGFQPYPIIDDMGCSLEESLFKNVQYPNHFEAGIFNPFPIRFRASSAAVVLFCVTT 145

Query: 195 GLQI 206
            + I
Sbjct: 146 VVPI 149


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 117 TADLHVPSKIKCYVSSLTVLYFCIYTG 197
           +AD H  +++  Y+  +T++ F  Y G
Sbjct: 303 SADAHNKTEVDLYIPFMTIIEFIFYMG 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,419,529
Number of Sequences: 27780
Number of extensions: 64213
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)