Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B06
         (241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   1.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   4.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   8.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   8.5  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -2

Query: 228 YIHQVSSLSVIQCKYRNTKPSKMTHNI 148
           YI  V+  +++   +RN++  ++T+N+
Sbjct: 199 YIADVTGFALLVYDFRNSRSWRITNNL 225


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.8 bits (39), Expect = 4.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 177 YFCIYTGLQIT 209
           YFCI+ G++ T
Sbjct: 188 YFCIWKGVKTT 198


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 138 SKIKCYVSSLTVLYFCIYTGLQI 206
           S+   YVS LT++ F I   L I
Sbjct: 114 SETSSYVSVLTIVAFSIERYLAI 136


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 177 YFCIYTGLQIT 209
           YFCI+ G++ T
Sbjct: 221 YFCIWKGVKWT 231


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 177 YFCIYTGLQIT 209
           YFCI+ G++ T
Sbjct: 274 YFCIWKGVKWT 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,902
Number of Sequences: 438
Number of extensions: 746
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4024224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)