Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B05
(334 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 112 1e-26
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 106 8e-25
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 2e-11
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 55 2e-09
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.19
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.25
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 1.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 2.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 3.0
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 3.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 3.0
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 5.3
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 24 5.3
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 5.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 24 5.3
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 7.0
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 24 7.0
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 23 9.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 9.2
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 9.2
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 23 9.2
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 112 bits (270), Expect = 1e-26
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +1
Query: 121 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 300
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 301 DVPRAVFVDLE 333
VPR+++VDLE
Sbjct: 61 YVPRSIYVDLE 71
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 106 bits (255), Expect = 8e-25
Identities = 53/76 (69%), Positives = 58/76 (76%), Gaps = 5/76 (6%)
Frame = +1
Query: 121 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 285
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 286 TGAGKDVPRAVFVDLE 333
TG GK VPR+++VDLE
Sbjct: 60 TGQGKFVPRSIYVDLE 75
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.5 bits (145), Expect = 2e-11
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +1
Query: 124 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKD 303
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 304 VPRAVFVDLE 333
+PRA+ +DLE
Sbjct: 61 IPRAILIDLE 70
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 55.2 bits (127), Expect = 2e-09
Identities = 29/71 (40%), Positives = 36/71 (50%)
Frame = +1
Query: 121 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 300
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 301 DVPRAVFVDLE 333
VPRAV VDLE
Sbjct: 59 YVPRAVLVDLE 69
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.19
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 161 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVET-TPSTRSSARPELARTFPVPSSSIL 331
SRS P + ++S A+ Q+T P+ V + TP T SS L + P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 332 N 334
N
Sbjct: 403 N 403
Score = 25.4 bits (53), Expect = 2.3
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 113 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 289
+T S+S+ + P + S + S ++++S L +T + V + TP T S+A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 290 ELARTFPVPSSSILN 334
L + P+ SSS+LN
Sbjct: 1278 -LNTSIPITSSSVLN 1291
Score = 23.8 bits (49), Expect = 7.0
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 113 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 286
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 1989 STPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2045
Query: 287 PELARTFPVPSSSILN 334
L + P+ SSS+LN
Sbjct: 2046 --LNTSTPITSSSVLN 2059
Score = 23.4 bits (48), Expect = 9.2
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 113 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 286
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 453 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 509
Query: 287 PELARTFPVPSSSILN 334
L + P+ SSS+LN
Sbjct: 510 --LNTSTPITSSSVLN 523
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.25
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 161 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELARTFPVPSSSILN 334
S S + + + ST S+L ++PS T+ ST SSA P + + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/62 (22%), Positives = 30/62 (48%)
Frame = +2
Query: 140 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELARTFPVPS 319
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + T + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 320 SS 325
+
Sbjct: 72 EA 73
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 242 PSGVETTPSTRSSARPELARTFPV 313
P+ VETTPST +SA + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 3.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 250 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 155
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 3.0
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +2
Query: 104 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 283
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 284 RPELARTFP 310
+ + T P
Sbjct: 142 KKIESITIP 150
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 3.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 279 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 151
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 5.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 110 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 283
LNT C+ + + + +E A S I+ TA NL+ C L+ P +P+ +++A
Sbjct: 132 LNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC-LSSPWIFRASPTLQNTA 188
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 266 STRSSARPELARTFPVPSSSILN 334
S +S A+PEL RT SSS ++
Sbjct: 111 SAKSKAKPELLRTLTSKSSSAVD 133
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 279 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVY 139
E+ V GVV + + W L++ LD + + G+ D+ L ++
Sbjct: 399 EDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDVPPQLMFIH 445
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.2 bits (50), Expect = 5.3
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 155 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELARTFPVPS 319
P S S + LST+S ++ T SG PST SS + P+ S
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTS 537
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 210 DAVLKAIQLPAGISDLDSGLANV 142
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 23.8 bits (49), Expect = 7.0
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 311 RGTSLPAPVSLKNVLKESSPPP 246
RG ++P P S+ + S PPP
Sbjct: 43 RGLTIPPPPSVDHSAPPSGPPP 64
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 228 HLTIRLDAVLKAIQLPAG-ISDLDSGLANVYRDALTHFVLSF 106
H I+ D L I ++ +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +1
Query: 181 WELYCLEHGIQPDGQMPTDKTI 246
WELYC E G +M KTI
Sbjct: 289 WELYCQEAGGIIGDEMGLGKTI 310
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 129 VHLCTRWPSRSPDRK 173
+H WPSR+P RK
Sbjct: 3 LHDAYHWPSRTPSRK 17
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 69 RLINLFYLHLSSKNSIQNA*VHLC 140
+L N+F H ++ IQ A H+C
Sbjct: 199 QLCNIFVNHSKAREDIQKAVNHIC 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,712
Number of Sequences: 5004
Number of extensions: 28722
Number of successful extensions: 116
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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