Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B04
(412 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64; Eukary... 98 7e-20
UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|R... 94 1e-18
UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87; Eukary... 82 5e-15
UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1; ... 81 7e-15
UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089, ... 66 3e-10
UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1; ... 58 7e-08
UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=... 55 6e-07
UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lambl... 54 1e-06
UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiell... 51 1e-05
UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1; Encepha... 48 6e-05
UniRef50_A7NSS9 Cluster: Chromosome chr18 scaffold_1, whole geno... 38 0.080
UniRef50_P38120 Cluster: 37S ribosomal protein S9, mitochondrial... 37 0.18
UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10; Thermo... 36 0.24
UniRef50_A6DDR0 Cluster: 30S ribosomal protein S9; n=1; Caminiba... 35 0.56
UniRef50_Q9KGD4 Cluster: 30S ribosomal protein S9; n=22; Bacteri... 35 0.74
UniRef50_P56358 Cluster: Chloroplast 30S ribosomal protein S9; n... 35 0.74
UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4; Archaea... 34 0.98
UniRef50_Q98Q72 Cluster: 30S ribosomal protein S9; n=66; Bacteri... 34 1.3
UniRef50_A5WDK8 Cluster: Ribosomal protein S9; n=2; Proteobacter... 33 1.7
UniRef50_Q83AX9 Cluster: 30S ribosomal protein S9; n=101; Bacter... 33 1.7
UniRef50_UPI0000DA28A7 Cluster: PREDICTED: similar to ribosomal ... 33 3.0
UniRef50_A6C0N9 Cluster: 30S ribosomal protein S9; n=1; Planctom... 33 3.0
UniRef50_Q6CLI2 Cluster: Similarities with ca|CA4951|IPF13607 Ca... 33 3.0
UniRef50_O94150 Cluster: 40S ribosomal protein S9, mitochondrial... 32 4.0
UniRef50_Q6F0X3 Cluster: 30S ribosomal protein S9; n=19; Bacteri... 32 5.2
UniRef50_Q8U5K5 Cluster: AGR_C_812p; n=1; Agrobacterium tumefaci... 32 5.2
UniRef50_Q1UZ81 Cluster: 30S ribosomal protein S9; n=2; Candidat... 32 5.2
UniRef50_Q4T8B2 Cluster: Chromosome undetermined SCAF7849, whole... 31 6.9
UniRef50_P82933 Cluster: 28S ribosomal protein S9, mitochondrial... 31 6.9
UniRef50_O14006 Cluster: 40S ribosomal protein S9, mitochondrial... 31 9.1
UniRef50_Q982W9 Cluster: 30S ribosomal protein S9; n=190; cellul... 31 9.1
UniRef50_P47656 Cluster: 30S ribosomal protein S9; n=5; Firmicut... 31 9.1
>UniRef50_P62249 Cluster: 40S ribosomal protein S16; n=64;
Eukaryota|Rep: 40S ribosomal protein S16 - Homo sapiens
(Human)
Length = 146
Score = 97.9 bits (233), Expect = 7e-20
Identities = 45/53 (84%), Positives = 51/53 (96%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
LLGKE+F+GVDIRV KGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIK
Sbjct: 57 LLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIK 109
Score = 37.1 bits (82), Expect = 0.14
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 82 IQAVQVFGRKKLHCGT-YCKRDMECAVMDAPSTG--KPRLLQYKLQEPIL 222
+Q+VQVFGRKK +CKR ++ +PR LQYKL EP+L
Sbjct: 7 LQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVL 56
>UniRef50_Q4PM67 Cluster: Ribosomal protein S16; n=5; Eukaryota|Rep:
Ribosomal protein S16 - Ixodes scapularis (Black-legged
tick) (Deer tick)
Length = 148
Score = 93.9 bits (223), Expect = 1e-18
Identities = 43/53 (81%), Positives = 50/53 (94%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
LLGKE+F+GVDIR+ KGGG+VAQ+YAIRQAISKAL+A+YQKYVDE SKKEIK
Sbjct: 59 LLGKERFAGVDIRIRVKGGGNVAQIYAIRQAISKALVAYYQKYVDEQSKKEIK 111
Score = 34.3 bits (75), Expect = 0.98
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 73 KMNIQAVQVFGRKKLHCG-TYCKR-DMECAVMDAPSTG-KPRLLQYKLQEPIL 222
K IQ+VQV GRKK YCKR + V P +P L+YKL EPIL
Sbjct: 6 KEAIQSVQVLGRKKTATAVAYCKRGNGLLKVNGRPLENIEPLTLRYKLLEPIL 58
>UniRef50_P40213 Cluster: 40S ribosomal protein S16; n=87;
Eukaryota|Rep: 40S ribosomal protein S16 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 143
Score = 81.8 bits (193), Expect = 5e-15
Identities = 37/58 (63%), Positives = 48/58 (82%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKRHSSS 395
L+G +KFS +DIRV GGGHV+QVYAIRQAI+K L+A++QKYVDE SK E+K+ +S
Sbjct: 54 LVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTS 111
>UniRef50_Q5AQG2 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 155
Score = 81.4 bits (192), Expect = 7e-15
Identities = 35/54 (64%), Positives = 47/54 (87%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKR 383
++G +KF+GVDIRV GGGH +QVYAIRQAI+K+L+A+YQKYVDE SK ++K+
Sbjct: 66 IVGADKFAGVDIRVRVTGGGHTSQVYAIRQAIAKSLVAYYQKYVDEHSKNQLKQ 119
>UniRef50_Q6ZWL6 Cluster: CDNA FLJ40618 fis, clone THYMU2013089,
moderately similar to 40S RIBOSOMAL PROTEIN S16; n=2;
Homo sapiens|Rep: CDNA FLJ40618 fis, clone THYMU2013089,
moderately similar to 40S RIBOSOMAL PROTEIN S16 - Homo
sapiens (Human)
Length = 178
Score = 66.1 bits (154), Expect = 3e-10
Identities = 33/53 (62%), Positives = 40/53 (75%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
LL KE+ +G+DI V KG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIK
Sbjct: 68 LLDKEQLAGMDIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIK 119
>UniRef50_Q4PHH7 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 199
Score = 58.0 bits (134), Expect = 7e-08
Identities = 26/47 (55%), Positives = 36/47 (76%)
Frame = +3
Query: 243 SGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKR 383
S VDIR+ GGG +Q+YAIRQAI+K+L+A+Y KY D AS E+++
Sbjct: 117 STVDIRLRVSGGGATSQIYAIRQAIAKSLVAYYAKYYDAASALELRQ 163
>UniRef50_Q4Q9A5 Cluster: 40S ribosomal protein S16, putative; n=7;
Trypanosomatidae|Rep: 40S ribosomal protein S16,
putative - Leishmania major
Length = 149
Score = 54.8 bits (126), Expect = 6e-07
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
++G + +S + I V GGG V+Q YA RQAI+K LIAF+QKY +E K +K
Sbjct: 60 VVGSKYYSRLRIDVAVHGGGQVSQAYAARQAIAKGLIAFFQKYHNEVEKAALK 112
>UniRef50_Q7R487 Cluster: GLP_480_84573_84097; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_480_84573_84097 - Giardia lamblia
ATCC 50803
Length = 158
Score = 53.6 bits (123), Expect = 1e-06
Identities = 23/53 (43%), Positives = 39/53 (73%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
+LG+ F G+D+ + GGGHV+Q+YA+RQAIS+ ++A + DEA++ E++
Sbjct: 72 ILGESLFKGLDMNIKVAGGGHVSQIYAVRQAISRGVLASVK---DEAARSELR 121
>UniRef50_Q3LWA6 Cluster: Ribosomal protein S16; n=1; Bigelowiella
natans|Rep: Ribosomal protein S16 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 139
Score = 50.8 bits (116), Expect = 1e-05
Identities = 23/52 (44%), Positives = 35/52 (67%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEI 377
+LG + ++ + KGGG V+Q+YAIRQ+ISK L+ +Y KY+ ASK +
Sbjct: 50 ILGSNERLNLNFDIFSKGGGKVSQIYAIRQSISKCLVFYYYKYI-SASKSNL 100
>UniRef50_Q8SSC2 Cluster: 40S RIBOSOMAL PROTEIN S16; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S16
- Encephalitozoon cuniculi
Length = 145
Score = 48.4 bits (110), Expect = 6e-05
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +3
Query: 261 VTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKR 383
+T K GG V++VYA+R A +KA++AFY Y DE K+EI++
Sbjct: 69 ITCKIGGDVSRVYAVRMAFAKAILAFYGTYFDEWKKQEIQK 109
>UniRef50_A7NSS9 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 105
Score = 37.9 bits (84), Expect = 0.080
Identities = 15/45 (33%), Positives = 30/45 (66%)
Frame = -3
Query: 374 LLLRCFVYIFLVESDKGFRDGLSDCINLCNMSTTFSSHSNIHTRE 240
LLL + + L+E ++GF + L+DC+ L ++TTF + ++++ E
Sbjct: 18 LLLALLIDVLLIEGNEGFGNALADCVYLGGVTTTFYAGAHVNVGE 62
>UniRef50_P38120 Cluster: 37S ribosomal protein S9, mitochondrial
precursor; n=7; Saccharomycetales|Rep: 37S ribosomal
protein S9, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 278
Score = 36.7 bits (81), Expect = 0.18
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = +3
Query: 114 TALRYILQTRHGVCCNGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQ 293
TA ++++ + NGR L+ YPL E +I T GGG Q
Sbjct: 164 TAKVFVVRGTGEILVNGRQLNDYFLKMKDRESIMYPLQVIESVGKYNIFATTSGGGPTGQ 223
Query: 294 VYAIRQAISKALIAF 338
+I AI+KAL+ F
Sbjct: 224 AESIMHAIAKALVVF 238
>UniRef50_Q9YB48 Cluster: 30S ribosomal protein S9P; n=10;
Thermoprotei|Rep: 30S ribosomal protein S9P - Aeropyrum
pernix
Length = 151
Score = 36.3 bits (80), Expect = 0.24
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Frame = +3
Query: 219 PLL--GKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQ-KYVDEASKKEIKRHS 389
PLL G+ S VDIRV +GGG + Q A+R AI++ L+ F++ + D+ + + + S
Sbjct: 51 PLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS 110
Query: 390 SSIRQKF 410
+R F
Sbjct: 111 RDLRTAF 117
>UniRef50_A6DDR0 Cluster: 30S ribosomal protein S9; n=1;
Caminibacter mediatlanticus TB-2|Rep: 30S ribosomal
protein S9 - Caminibacter mediatlanticus TB-2
Length = 144
Score = 35.1 bits (77), Expect = 0.56
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 150 VCCNGRXLD-WXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKA 326
+ NG+ LD + +PL+ ++ DI V GGG AQ AI+ ISKA
Sbjct: 29 ITVNGKPLDEFLGGREALKLRVRWPLMLVKQEGNFDIEVKVLGGGFAAQADAIKHGISKA 88
Query: 327 LIAFYQKY 350
L+ + ++
Sbjct: 89 LVEYAPEF 96
>UniRef50_Q9KGD4 Cluster: 30S ribosomal protein S9; n=22;
Bacteria|Rep: 30S ribosomal protein S9 - Bacillus
halodurans
Length = 130
Score = 34.7 bits (76), Expect = 0.74
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +3
Query: 150 VCCNGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKAL 329
+ NGR LD PL+ D+RV GGG Q AIR I++AL
Sbjct: 28 IVINGRSLDEYFGLETLKLIVKQPLVETGTEGQYDVRVNVDGGGFTGQAGAIRHGIARAL 87
Query: 330 IAFYQKY 350
+ +Y
Sbjct: 88 LQVDPEY 94
>UniRef50_P56358 Cluster: Chloroplast 30S ribosomal protein S9; n=1;
Chlorella vulgaris|Rep: Chloroplast 30S ribosomal
protein S9 - Chlorella vulgaris (Green alga)
Length = 137
Score = 34.7 bits (76), Expect = 0.74
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 252 DIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKRHSSSIRQK 407
D+ + +GGG AQ A++ A+SKA + F+ +Y K + + I+++
Sbjct: 69 DVHILVEGGGLSAQAQAVKLALSKAFVDFFPEYRKVFKKPGLLTRDARIKER 120
>UniRef50_O59299 Cluster: 30S ribosomal protein S9P; n=4;
Archaea|Rep: 30S ribosomal protein S9P - Pyrococcus
horikoshii
Length = 135
Score = 34.3 bits (75), Expect = 0.98
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALI 332
L G+E ++ VDI V +GGG + Q A R AI++AL+
Sbjct: 51 LAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALV 87
>UniRef50_Q98Q72 Cluster: 30S ribosomal protein S9; n=66;
Bacteria|Rep: 30S ribosomal protein S9 - Mycoplasma
pulmonis
Length = 136
Score = 33.9 bits (74), Expect = 1.3
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +3
Query: 252 DIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKRHSSSIRQK 407
DIRVT +GGG Q AIR I++AL+ Y + ++ ++ ++++
Sbjct: 68 DIRVTVRGGGLAGQAGAIRLGIARALLEISADYRSVLKEAKMLTRNTKVKER 119
>UniRef50_A5WDK8 Cluster: Ribosomal protein S9; n=2;
Proteobacteria|Rep: Ribosomal protein S9 - Psychrobacter
sp. PRwf-1
Length = 128
Score = 33.5 bits (73), Expect = 1.7
Identities = 25/80 (31%), Positives = 33/80 (41%)
Frame = +3
Query: 93 TSFRP*ETALRYILQTRHGVCCNGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGK 272
T R TA ++ + + NG+ LD PL + DI T K
Sbjct: 7 TGRRKTSTARVFLSKGTGNIVVNGKPLDEYFGRETSRMVVRQPLELLDSAETYDIYATVK 66
Query: 273 GGGHVAQVYAIRQAISKALI 332
GGG Q AIR I++ALI
Sbjct: 67 GGGINGQAGAIRHGITRALI 86
>UniRef50_Q83AX9 Cluster: 30S ribosomal protein S9; n=101;
Bacteria|Rep: 30S ribosomal protein S9 - Coxiella
burnetii
Length = 139
Score = 33.5 bits (73), Expect = 1.7
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 114 TALRYILQTRHG-VCCNGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVA 290
++ R L++ G + NG LD PL+ + S D+ T +GGG
Sbjct: 18 SSARVFLRSGTGQIIINGLPLDEYFGRETARMVVRQPLVKLDVQSRFDVYATVQGGGDSG 77
Query: 291 QVYAIRQAISKALIAF 338
Q AIR I++ALI +
Sbjct: 78 QAGAIRHGITRALIQY 93
>UniRef50_UPI0000DA28A7 Cluster: PREDICTED: similar to ribosomal
protein S16; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S16 - Rattus norvegicus
Length = 102
Score = 32.7 bits (71), Expect = 3.0
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +3
Query: 225 LGKEKFSGVDIRVTGKGGGHVAQVYAI 305
LGKE+F+ V I V G G VAQ+YAI
Sbjct: 76 LGKERFARVGIWVRVNGVGRVAQIYAI 102
>UniRef50_A6C0N9 Cluster: 30S ribosomal protein S9; n=1;
Planctomyces maris DSM 8797|Rep: 30S ribosomal protein
S9 - Planctomyces maris DSM 8797
Length = 201
Score = 32.7 bits (71), Expect = 3.0
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 219 PLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASK-KEIKRHSSS 395
PL E F VD+ V GGG Q AI I++AL A+ ++ + S + + R S
Sbjct: 122 PLKATETFGKVDVWVRVTGGGTTGQTGAIVLGIARALEAYNNQFHETLSAGRFLTRDSRM 181
Query: 396 IRQK 407
+ +K
Sbjct: 182 VERK 185
>UniRef50_Q6CLI2 Cluster: Similarities with ca|CA4951|IPF13607
Candida albicans unknown function; n=2;
Saccharomycetaceae|Rep: Similarities with
ca|CA4951|IPF13607 Candida albicans unknown function -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 951
Score = 32.7 bits (71), Expect = 3.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 252 DIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKRHSSSIRQ 404
D+ G G ++A V +R + +L+ YQ D+ +K ++ + SSI Q
Sbjct: 389 DLEPLGIEGSYIAPVDRVRGGVLGSLLKLYQNQDDQYTKSQLSLNDSSIEQ 439
>UniRef50_O94150 Cluster: 40S ribosomal protein S9, mitochondrial
precursor; n=5; Saccharomycetales|Rep: 40S ribosomal
protein S9, mitochondrial precursor - Candida albicans
(Yeast)
Length = 336
Score = 32.3 bits (70), Expect = 4.0
Identities = 23/94 (24%), Positives = 38/94 (40%)
Frame = +3
Query: 126 YILQTRHGVCCNGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQVYAI 305
Y+++ V NG+ L YP E+ ++ GGG+ Q AI
Sbjct: 226 YLVKGEGEVLVNGKSLIEFFPNIYARKNLLYPFQVVEQEGKYNVFAQVTGGGYTGQSEAI 285
Query: 306 RQAISKALIAFYQKYVDEASKKEIKRHSSSIRQK 407
AI+KAL+ F SK + + + I ++
Sbjct: 286 MYAIAKALVVFNPLLKPRLSKAGLMKSDTRIVER 319
>UniRef50_Q6F0X3 Cluster: 30S ribosomal protein S9; n=19;
Bacteria|Rep: 30S ribosomal protein S9 - Mesoplasma
florum (Acholeplasma florum)
Length = 131
Score = 31.9 bits (69), Expect = 5.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 219 PLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKY 350
PL+ DI VT KGGG Q A R I++AL+ + Y
Sbjct: 52 PLVATGTEKDFDITVTVKGGGFTGQAGATRLGIARALLVASEDY 95
>UniRef50_Q8U5K5 Cluster: AGR_C_812p; n=1; Agrobacterium tumefaciens
str. C58|Rep: AGR_C_812p - Agrobacterium tumefaciens
(strain C58 / ATCC 33970)
Length = 733
Score = 31.9 bits (69), Expect = 5.2
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +3
Query: 225 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDE 359
+G E+F VDIR G G GH Q Y +RQ ++ Y +YV E
Sbjct: 376 IGGEEFQIVDIRANG-GPGH--QTYGVRQIRYESYNEVYWEYVTE 417
>UniRef50_Q1UZ81 Cluster: 30S ribosomal protein S9; n=2; Candidatus
Pelagibacter ubique|Rep: 30S ribosomal protein S9 -
Candidatus Pelagibacter ubique HTCC1002
Length = 149
Score = 31.9 bits (69), Expect = 5.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 159 NGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAF 338
NGR +D P + + D+R + GGGH Q A+ I+KALI F
Sbjct: 50 NGRTMDEYFTSGSHKMQITRPFEIINQATDYDVRCSVAGGGHTGQAGAMVHGIAKALILF 109
>UniRef50_Q4T8B2 Cluster: Chromosome undetermined SCAF7849, whole
genome shotgun sequence; n=3; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7849,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 1319
Score = 31.5 bits (68), Expect = 6.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 266 WKRWWTCCTGLC 301
W+RWWT C GLC
Sbjct: 4 WQRWWTGCRGLC 15
>UniRef50_P82933 Cluster: 28S ribosomal protein S9, mitochondrial
precursor; n=29; Euteleostomi|Rep: 28S ribosomal protein
S9, mitochondrial precursor - Homo sapiens (Human)
Length = 396
Score = 31.5 bits (68), Expect = 6.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 216 YPLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAF 338
+P ++ D+ T GGG AQ AIR A++KAL +F
Sbjct: 315 FPFHFVDRLGKHDVTCTVSGGGRSAQAGAIRLAMAKALCSF 355
>UniRef50_O14006 Cluster: 40S ribosomal protein S9, mitochondrial
precursor; n=1; Schizosaccharomyces pombe|Rep: 40S
ribosomal protein S9, mitochondrial precursor -
Schizosaccharomyces pombe (Fission yeast)
Length = 132
Score = 31.1 bits (67), Expect = 9.1
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +3
Query: 159 NGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALI 332
NG D YPL + + ++ T GGG Q A+ AISK+LI
Sbjct: 33 NGSPFDVYFQRMVHRKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAISKSLI 90
>UniRef50_Q982W9 Cluster: 30S ribosomal protein S9; n=190; cellular
organisms|Rep: 30S ribosomal protein S9 - Rhizobium loti
(Mesorhizobium loti)
Length = 160
Score = 31.1 bits (67), Expect = 9.1
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 219 PLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 371
P++ + DI T GGG Q A+R ISKAL +Y+ + KK
Sbjct: 81 PIIASNRSGQYDIVATVVGGGLSGQAGAVRHGISKAL-TYYEPALRAVLKK 130
>UniRef50_P47656 Cluster: 30S ribosomal protein S9; n=5;
Firmicutes|Rep: 30S ribosomal protein S9 - Mycoplasma
genitalium
Length = 132
Score = 31.1 bits (67), Expect = 9.1
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +3
Query: 252 DIRVTGKGGGHVAQVYAIRQAISKALIAF 338
DI V KGGG Q AIR I +ALI F
Sbjct: 64 DINVVVKGGGFTGQAGAIRLGIVRALIKF 92
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 385,860,978
Number of Sequences: 1657284
Number of extensions: 7252349
Number of successful extensions: 16337
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 15927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16332
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18619342852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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