Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B04
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...    83   2e-17
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...    83   2e-17
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    31   0.070
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    26   2.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.6  
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    25   3.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   4.6  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    24   8.0  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 36/52 (69%), Positives = 46/52 (88%)
 Frame = +3

Query: 228 GKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKR 383
           G +KF+GVDIRV   GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K+
Sbjct: 53  GADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKK 104


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 36/52 (69%), Positives = 46/52 (88%)
 Frame = +3

Query: 228 GKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKR 383
           G +KF+GVDIRV   GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K+
Sbjct: 53  GADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKK 104


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 31.1 bits (67), Expect = 0.070
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 159 NGRXLDWXXXXXXXXXXXXYPLLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALI 332
           NG   D             YPL    + +  ++  T  GGG   Q  A+  AISK+LI
Sbjct: 33  NGSPFDVYFQRMVHRKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAISKSLI 90


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 109 KKLHCGTYCKRDMECAVMDAPSTGKPRLLQYKL 207
           K L  GT+ + D+   ++  PST K +LL++ L
Sbjct: 338 KNLTNGTHIRGDINILMVGDPSTAKSQLLRFVL 370


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 158 TAHSMSRLQYVPQCSFLRPKTCTAWMFILP 69
           +AH  ++  Y+ + +F  P   TAW +I P
Sbjct: 226 SAHFFAQCSYLKKSNFPSPPLFTAWTWIKP 255


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 365 RCFVYIFLVESDKGFRDGLSDCINLCNMSTTFSSHSNIH 249
           +C V +  V+ +KG R  LS  I   N+ +T     N H
Sbjct: 318 KCLVSLLFVDGEKGLRSELSQ-IPTENIDSTTDRFDNYH 355


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -3

Query: 350 IFLVESDKGFRDGLSDCINLCNMSTTFSS--HSNIHTREL 237
           +F    D+GFR   S C N  N+  T +S   ++IH  EL
Sbjct: 705 LFTTWGDQGFRPSDSICYNDFNLLETANSDAEASIHELEL 744


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 341 VESDKGFRDGLSDCINLCNMSTTF 270
           + +D  F   +S  + +CN+STTF
Sbjct: 231 IRNDYPFPQVVSCTVEMCNLSTTF 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,623
Number of Sequences: 5004
Number of extensions: 31468
Number of successful extensions: 90
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)