Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B04
(412 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0152 - 1168928-1169377 79 1e-15
11_01_0155 - 1287003-1287452 79 1e-15
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 29 1.4
03_06_0717 + 35702592-35703152,35703789-35704121 29 1.4
03_06_0080 - 31512792-31513046,31514087-31514202,31514797-315149... 29 1.9
11_01_0523 - 4109070-4109984,4110532-4110936 28 3.3
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 27 5.8
09_04_0524 + 18321110-18323978,18324098-18324576 27 7.7
08_02_1352 - 26325081-26325150,26325315-26325391,26326799-263269... 27 7.7
02_05_0971 - 33188816-33188965,33190406-33190705,33191500-331915... 27 7.7
>12_01_0152 - 1168928-1169377
Length = 149
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
L G+ +F +D+R+ +GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+K
Sbjct: 60 LAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVK 112
>11_01_0155 - 1287003-1287452
Length = 149
Score = 79.4 bits (187), Expect = 1e-15
Identities = 33/53 (62%), Positives = 45/53 (84%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
L G+ +F +D+R+ +GGG +Q+YAIRQAI+KAL+A+YQKYVDEASKKE+K
Sbjct: 60 LAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVK 112
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +3
Query: 252 DIRVTGKGGGHVAQVYAIRQAISKAL 329
D+ T KGGG QV AIR IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372
>03_06_0717 + 35702592-35703152,35703789-35704121
Length = 297
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 176 VEGASITAHSMSRLQYVPQCSFLRPKTCTAWMFILPLLA 60
++G S+ ++ + + S PKTCT MF+ P++A
Sbjct: 10 IKGKSVVLTCLASVLLLSAGSIKAPKTCTGGMFLGPIIA 48
>03_06_0080 -
31512792-31513046,31514087-31514202,31514797-31514911,
31514997-31515056,31515619-31515688,31515952-31515986,
31516094-31516231,31516369-31516737
Length = 385
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/53 (22%), Positives = 23/53 (43%)
Frame = +1
Query: 118 HCGTYCKRDMECAVMDAPSTGKPRLLQYKLQEPILC*ARKSSLVWILE*LEKV 276
HCGT C+ + G+ ++++ +Q P +C + W+ L V
Sbjct: 84 HCGTSCQMMQSMQQVICAGLGQQQMMKMAMQMPYMCNMAPTCKYWVFGFLSHV 136
>11_01_0523 - 4109070-4109984,4110532-4110936
Length = 439
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 273 GGGHVAQVYAIRQAISKALIAFY 341
GGG V +++A++KAL+AFY
Sbjct: 48 GGGGFFDVGRLKEALAKALVAFY 70
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 131 TANETWSVL*WTXPRLVNPDFFSTNYRNL 217
TANETWS++ W L+ +F N+
Sbjct: 300 TANETWSIVEWRGKLLIVVTYFGEFGHNI 328
>09_04_0524 + 18321110-18323978,18324098-18324576
Length = 1115
Score = 26.6 bits (56), Expect = 7.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 267 GKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKRHSSSIRQ 404
G G G A V+ +RQA+S A + ++ D + K++ IR+
Sbjct: 1024 GAGAGADADVHEMRQAMSVAALCVARRADDRPAMKDVVALLKEIRR 1069
>08_02_1352 -
26325081-26325150,26325315-26325391,26326799-26326956,
26327433-26327518,26327635-26328317
Length = 357
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = +2
Query: 92 YKFSAVRNCTAVHTANETWSVL*WTXPRLVNPDFFSTNYRNLSFARQGKVLWCGY*SDWK 271
++F C A++T +S+ +T +V D F+ NYR ++ K + + W
Sbjct: 18 WRFFTAEQCAAINTMVVYFSMPFFTFDFVVRTDPFAMNYRVIAADAVSKAIAIAAMAAWA 77
Query: 272 R 274
R
Sbjct: 78 R 78
>02_05_0971 -
33188816-33188965,33190406-33190705,33191500-33191562,
33191637-33191710,33191880-33191973,33193396-33193482,
33193753-33193887
Length = 300
Score = 26.6 bits (56), Expect = 7.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 383 SFDLLLRCFVYIFLVESDKGFRDGLSDCINLCNMSTTFSSHSN 255
SF L + FV +F + D GF +G S C + S T +S ++
Sbjct: 155 SFKELQQLFVDMFQADLDSGFCNGPSKCYHTQAQSQTRTSSTS 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,725,401
Number of Sequences: 37544
Number of extensions: 209777
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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