Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B04
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 84 4e-17
U49829-10|AAA93389.2| 591|Caenorhabditis elegans Uncoordinated ... 32 0.14
U49829-9|AAQ81273.1| 673|Caenorhabditis elegans Uncoordinated p... 32 0.14
S66176-1|AAB28570.1| 591|Caenorhabditis elegans UNC-18 protein. 32 0.14
S34207-1|AAB21818.1| 673|Caenorhabditis elegans unc-18 protein. 32 0.14
Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z50859-2|CAA90727.2| 524|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 27 5.3
AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical ... 27 5.3
AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical ... 27 5.3
AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical ... 27 5.3
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 27 7.0
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 27 7.0
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 27 7.0
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 27 7.0
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 83.8 bits (198), Expect = 4e-17
Identities = 35/53 (66%), Positives = 46/53 (86%)
Frame = +3
Query: 222 LLGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIK 380
L+GKE+F VDIR+ GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K
Sbjct: 55 LVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELK 107
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +1
Query: 82 IQAVQVFGRKKLHCGT-YCKRDMECAVMDAPSTG--KPRLLQYKLQEPIL 222
+Q+VQ FGRKK +CK+ ++ +P++L+ KLQEP+L
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLL 54
>U49829-10|AAA93389.2| 591|Caenorhabditis elegans Uncoordinated
protein 18, isoform a protein.
Length = 591
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 98 FSAVRNCTAVHTANETWSVL*WTXPRLVNPDFFSTNYRNLSFAR 229
FS +R C V A + W V+ R++ PD F TN R+L+ R
Sbjct: 547 FSEMRACYEVTAARKPWEVV-IGSDRIITPDKFLTNLRDLNKPR 589
>U49829-9|AAQ81273.1| 673|Caenorhabditis elegans Uncoordinated
protein 18, isoform c protein.
Length = 673
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 98 FSAVRNCTAVHTANETWSVL*WTXPRLVNPDFFSTNYRNLSFAR 229
FS +R C V A + W V+ R++ PD F TN R+L+ R
Sbjct: 629 FSEMRACYEVTAARKPWEVV-IGSDRIITPDKFLTNLRDLNKPR 671
>S66176-1|AAB28570.1| 591|Caenorhabditis elegans UNC-18 protein.
Length = 591
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 98 FSAVRNCTAVHTANETWSVL*WTXPRLVNPDFFSTNYRNLSFAR 229
FS +R C V A + W V+ R++ PD F TN R+L+ R
Sbjct: 547 FSEMRACYEVTAARKPWEVV-IGSDRIITPDKFLTNLRDLNKPR 589
>S34207-1|AAB21818.1| 673|Caenorhabditis elegans unc-18 protein.
Length = 673
Score = 32.3 bits (70), Expect = 0.14
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 98 FSAVRNCTAVHTANETWSVL*WTXPRLVNPDFFSTNYRNLSFAR 229
FS +R C V A + W V+ R++ PD F TN R+L+ R
Sbjct: 629 FSEMRACYEVTAARKPWEVV-IGSDRIITPDKFLTNLRDLNKPR 671
>Z78200-4|CAB01582.1| 289|Caenorhabditis elegans Hypothetical
protein T04H1.5 protein.
Length = 289
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +3
Query: 246 GVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKRHSSSIRQK 407
GVDI+ KG GH +V A+++ ++ + A QK ++A+K E S R+K
Sbjct: 107 GVDIKANRKGLGH--EVEAVQER-NERVEAVMQKMKEQAAKHEELIDDYSKRRK 157
>Z50859-2|CAA90727.2| 524|Caenorhabditis elegans Hypothetical
protein T26C5.2 protein.
Length = 524
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 329 KGFRDGLSDCINLCNMSTTFSSHSN 255
KG+ DG+ CI LC +ST F+ S+
Sbjct: 423 KGY-DGMQLCIELCVLSTKFTCRSS 446
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 183 FTSRGXVHYSTLHVSFAVCTAVQFLTAEN 97
F S+ +H S L VSF AVQF A N
Sbjct: 294 FISQKILHLSGLTVSFVPTNAVQFRNAHN 322
>AF022985-6|AAB69963.1| 457|Caenorhabditis elegans Hypothetical
protein T15B7.7 protein.
Length = 457
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 183 FTSRGXVHYSTLHVSFAVCTAVQFLTAEN 97
F S+ +H S L VSF AVQF A N
Sbjct: 77 FISQKILHLSGLTVSFVPTNAVQFRNAHN 105
>AC006769-9|AAF60585.2| 779|Caenorhabditis elegans Hypothetical
protein Y45G12C.11 protein.
Length = 779
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 183 FTSRGXVHYSTLHVSFAVCTAVQFLTAEN 97
F S+ +H S L VSF AVQF A N
Sbjct: 285 FISQKILHLSGLTVSFVPTNAVQFRNAHN 313
>AC006645-2|AAF39844.2| 796|Caenorhabditis elegans Hypothetical
protein F56A4.6 protein.
Length = 796
Score = 27.1 bits (57), Expect = 5.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 183 FTSRGXVHYSTLHVSFAVCTAVQFLTAEN 97
F S+ +H S L VSF AVQF A N
Sbjct: 302 FISQKILHLSGLTVSFVPTNAVQFRNAHN 330
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 225 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 371
+G +K S VD++ G + IR AI +AF+Q YV+ K+
Sbjct: 583 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 625
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 225 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 371
+G +K S VD++ G + IR AI +AF+Q YV+ K+
Sbjct: 581 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 623
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 225 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 371
+G +K S VD++ G + IR AI +AF+Q YV+ K+
Sbjct: 581 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 623
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 225 LGKEKFSGVDIRVTGKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 371
+G +K S VD++ G + IR AI +AF+Q YV+ K+
Sbjct: 583 MGTQKISAVDLQSLGDA------ISEIRTAIHPRNVAFFQDYVEVHMKQ 625
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,780
Number of Sequences: 27780
Number of extensions: 180766
Number of successful extensions: 407
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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