Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B03
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   2.4  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    24   3.2  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    23   4.2  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    23   7.3  

>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 203 LFSITLCRKQSIKPMCYRDIVV 138
           L ++   R Q++ P C+RD++V
Sbjct: 577 LMAVLPARSQALVPPCFRDLMV 598


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 98  ILTWKMPKLNNRLKLQY 148
           ++ WK P LN R+ L+Y
Sbjct: 277 MMAWKNPALNARVSLRY 293


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 125 NNRLKLQY---LYSTWVL*IAFYTM*LKIK 205
           N RL+LQ    LYS +VL   FYT+ + IK
Sbjct: 88  NARLQLQKFYELYSDYVLKNPFYTLEMPIK 117


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 85  YFFKYTHVEDA*IKQ*IKTTISL*HMGFIDCFLH 186
           Y   Y    D  + + ++T I   H+G+++C LH
Sbjct: 274 YCRNYIKEGDYVVMKNVRTKID--HLGYLECILH 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,972
Number of Sequences: 5004
Number of extensions: 7607
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)