Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B03
         (207 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098504-6|ABO52818.1|  300|Caenorhabditis elegans Serpentine re...    27   1.4  
AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine re...    27   1.4  
Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.       25   7.4  
AY288941-1|AAP44084.1|  987|Caenorhabditis elegans EGL-15 protein.     25   7.4  
Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AF098504-6|ABO52818.1|  300|Caenorhabditis elegans Serpentine
           receptor, class t protein61 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 192 YIV*KAIYKTHVL*RYCSFNLLFNLGIFHVS 100
           Y++   IYK   L R  S+  +F LGIF ++
Sbjct: 57  YVILVTIYKDKELSRMASYRFMFFLGIFDIA 87


>AF098504-5|AAC67410.3|  322|Caenorhabditis elegans Serpentine
           receptor, class t protein62 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 192 YIV*KAIYKTHVL*RYCSFNLLFNLGIFHV 103
           Y++   IYK   L R  S+  +F LGIF V
Sbjct: 38  YLILSIIYKDKELFRMASYRFMFFLGIFDV 67


>Z81017-11|CAC70095.2| 1158|Caenorhabditis elegans Hypothetical
           protein F58A3.2c protein.
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 500 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 533


>Z81017-10|CAE47468.1| 1051|Caenorhabditis elegans Hypothetical
           protein F58A3.2e protein.
          Length = 1051

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 500 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 533


>Z81017-9|CAD44136.1| 1096|Caenorhabditis elegans Hypothetical
           protein F58A3.2d protein.
          Length = 1096

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 500 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 533


>Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical
           protein F58A3.2b protein.
          Length = 988

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 448 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 481


>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
           protein F58A3.2a protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 500 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 533


>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 500 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 533


>AY288941-1|AAP44084.1|  987|Caenorhabditis elegans EGL-15 protein.
          Length = 987

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 68  LTYNLFISSNILTWKMPKLNNRLKLQYLYSTWVL 169
           LT N F++ ++LT   PK++      Y+++T +L
Sbjct: 447 LTVNEFMAIHLLTGDEPKIDRWTTSDYIFTTILL 480


>Z71262-5|CAA95818.1|  606|Caenorhabditis elegans Hypothetical
           protein F22D6.6 protein.
          Length = 606

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 83  FISSNILTWKMPKLNNRLKLQYLYSTW 163
           FI   ++ W  P+    L   Y+Y  W
Sbjct: 128 FIDDAVIAWVQPECLGELDQHYMYYPW 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,233
Number of Sequences: 27780
Number of extensions: 39925
Number of successful extensions: 59
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)