Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B01
(292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 128 2e-31
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 128 2e-31
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.42
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 26 1.3
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 2.2
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 24 3.9
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 3.9
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 24 5.2
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 24 5.2
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 23 6.9
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 23 6.9
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 23 6.9
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 23 6.9
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 23 6.9
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 23 6.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 9.1
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 23 9.1
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 23 9.1
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 23 9.1
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 23 9.1
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 23 9.1
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 23 9.1
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 128 bits (309), Expect = 2e-31
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP + SR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
R+RK A+R GRH G+GKR+GT
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGT 84
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 128 bits (309), Expect = 2e-31
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP + SR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
R+RK A+R GRH G+GKR+GT
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGT 84
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.5 bits (58), Expect = 0.42
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 161 DVLSGISISDFIDLVWIKPHLFFTASHNRGCK 66
+VLS + +D + PHL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.8 bits (54), Expect = 1.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -2
Query: 249 CAPLCFCEHERGK 211
C P+CFC +E+ K
Sbjct: 1236 CCPVCFCPYEKSK 1248
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 2.2
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 42 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 167
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 24.2 bits (50), Expect = 3.9
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +3
Query: 99 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVLSRARVRKNTEA 245
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 246 RRKGR 260
R+ R
Sbjct: 349 RKSLR 353
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 24.2 bits (50), Expect = 3.9
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 51 KLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 182
+L +RLAA + RC ++ W D + NI+K+I DG
Sbjct: 1113 QLAERLAARLDRCKTQRQW-DHVVYALSLLPHKADNIQKLIDDG 1155
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 23.8 bits (49), Expect = 5.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +3
Query: 153 QNIRKMIKDGLVIKKPVAVLSRARVRKNTEARRKGRHCG 269
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 23.8 bits (49), Expect = 5.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 194 LDDQTILDHLTDVLSGISISD 132
LDDQ LD+ D++S IS+SD
Sbjct: 11 LDDQ--LDYQVDLVSEISVSD 29
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 145 LVLAISLISFGSSHTFF 95
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 145 LVLAISLISFGSSHTFF 95
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 23.4 bits (48), Expect = 6.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 55 YRRGLQPLLCDAVK 96
Y+RG QPLL D V+
Sbjct: 194 YKRGFQPLLPDVVQ 207
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 145 LVLAISLISFGSSHTFF 95
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 6.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 151 LELVLAISLISFGSSHTFFLPHRITE 74
+ +V A LI TFFL H+I E
Sbjct: 308 MNIVAAALLIHCTEEQTFFLMHKICE 333
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 145 LVLAISLISFGSSHTFF 95
L+L++ LISFG TFF
Sbjct: 276 LILSLFLISFGYFFTFF 292
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/33 (24%), Positives = 20/33 (60%)
Frame = +3
Query: 141 TNSRQNIRKMIKDGLVIKKPVAVLSRARVRKNT 239
T S ++ +IK+ +KP ++++++KN+
Sbjct: 912 TESLNQVKNLIKNDTSNRKPFGAENQSKLKKNS 944
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 51 KLQKRLAASVMRCGKKKVWLDPNEINEI 134
K K L +S+ W D NE+NE+
Sbjct: 19 KNTKSLQSSLESAENDPFWTDANELNEL 46
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 23.0 bits (47), Expect = 9.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 111 DPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSRA 221
D NE+ E N++ R N +K + ++K LSR+
Sbjct: 559 DRNELAEDLNSDDRYNFISRLKKFIFMEKEKNGLSRS 595
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 23.0 bits (47), Expect = 9.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 185 QTILDHLTDVLSGISISDFIDLVWIKPHLFFTASHNRGC 69
+TI+DHL D L ++IS + V + L+ R C
Sbjct: 405 ETIIDHLYDSLRLLAISVTMKYVRNQTILYVNLHDKRKC 443
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 23.0 bits (47), Expect = 9.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +2
Query: 14 SARGSPCQDEFPKVTEEAC 70
S+ PC E+ ++++EAC
Sbjct: 292 SSHNHPCVVEYSEISDEAC 310
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 291 LYLSSYQSHSDVLSC 247
+YL S + HSD +SC
Sbjct: 365 VYLGSLKGHSDYVSC 379
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 284 SPLTKATVTSFPARLCVFANTSAGKDS 204
SP K + + P + ++ NTS KDS
Sbjct: 244 SPSRKNNLNARPLTMSLYTNTSEEKDS 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,241,356
Number of Sequences: 5004
Number of extensions: 21590
Number of successful extensions: 69
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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