Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B01
(292 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537435-1|CAD97677.1| 205|Homo sapiens hypothetical protein pr... 145 2e-35
X63527-1|CAA45090.1| 196|Homo sapiens ribosomal protein L19 pro... 144 6e-35
S56985-1|AAB25672.1| 196|Homo sapiens ribosomal protein L19 pro... 144 6e-35
BC095445-1|AAH95445.1| 196|Homo sapiens ribosomal protein L19 p... 144 6e-35
BC066315-1|AAH66315.1| 196|Homo sapiens ribosomal protein L19 p... 144 6e-35
BC062709-1|AAH62709.1| 196|Homo sapiens ribosomal protein L19 p... 144 6e-35
BC013016-1|AAH13016.1| 196|Homo sapiens ribosomal protein L19 p... 144 6e-35
BC000530-1|AAH00530.1| 196|Homo sapiens ribosomal protein L19 p... 144 6e-35
AK223082-1|BAD96802.1| 196|Homo sapiens ribosomal protein L19 v... 144 6e-35
AY157980-1|AAN76335.1| 173|Homo sapiens ribosomal protein L19 p... 113 1e-25
BC117215-1|AAI17216.1| 734|Homo sapiens ZNF235 protein protein. 28 6.3
AF027513-1|AAD12728.1| 506|Homo sapiens zinc finger protein pro... 28 6.3
>BX537435-1|CAD97677.1| 205|Homo sapiens hypothetical protein
protein.
Length = 205
Score = 145 bits (352), Expect = 2e-35
Identities = 69/89 (77%), Positives = 76/89 (85%)
Frame = +3
Query: 24 AHRARMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPV 203
A A MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV
Sbjct: 5 AAAAAMSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPV 64
Query: 204 AVLSRARVRKNTEARRKGRHCGFGKRRGT 290
V SRAR RKNT ARRKGRH G GKR+GT
Sbjct: 65 TVHSRARCRKNTLARRKGRHMGIGKRKGT 93
>X63527-1|CAA45090.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>S56985-1|AAB25672.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>BC095445-1|AAH95445.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>BC066315-1|AAH66315.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>BC062709-1|AAH62709.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>BC013016-1|AAH13016.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>BC000530-1|AAH00530.1| 196|Homo sapiens ribosomal protein L19
protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>AK223082-1|BAD96802.1| 196|Homo sapiens ribosomal protein L19
variant protein.
Length = 196
Score = 144 bits (348), Expect = 6e-35
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SR
Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
AR RKNT ARRKGRH G GKR+GT
Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGT 84
>AY157980-1|AAN76335.1| 173|Homo sapiens ribosomal protein L19
protein.
Length = 173
Score = 113 bits (271), Expect = 1e-25
Identities = 52/65 (80%), Positives = 56/65 (86%)
Frame = +3
Query: 96 KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSRARVRKNTEARRKGRHCGFG 275
KKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV V SRAR RKNT ARRKGRH G G
Sbjct: 1 KKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIG 60
Query: 276 KRRGT 290
KR+GT
Sbjct: 61 KRKGT 65
>BC117215-1|AAI17216.1| 734|Homo sapiens ZNF235 protein protein.
Length = 734
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -3
Query: 260 TSFPARLCVFANTSAGKDSNGFLDDQTILDHLTDVLSGISISDF----IDLVWIKPHLFF 93
+ FP AG+ +DD +++H+ D S I +F + W K +L
Sbjct: 127 SQFPKHHDSPCQVGAGESIQASVDDNCLVNHIGDHSSIIENQEFPTGKVPNSWSKIYLNE 186
Query: 92 TASHNRGCK 66
T ++ R CK
Sbjct: 187 TQNYQRSCK 195
>AF027513-1|AAD12728.1| 506|Homo sapiens zinc finger protein
protein.
Length = 506
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -3
Query: 260 TSFPARLCVFANTSAGKDSNGFLDDQTILDHLTDVLSGISISDF----IDLVWIKPHLFF 93
+ FP AG+ +DD +++H+ D S I +F + W K +L
Sbjct: 131 SQFPKHHDSPCQVGAGESIQASVDDNCLVNHIGDHSSIIENQEFPTGKVPNSWSKIYLNE 190
Query: 92 TASHNRGCK 66
T ++ R CK
Sbjct: 191 TQNYQRSCK 199
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,405,167
Number of Sequences: 237096
Number of extensions: 824024
Number of successful extensions: 1986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1986
length of database: 76,859,062
effective HSP length: 73
effective length of database: 59,551,054
effective search space used: 1369674242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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