Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_B01
(292 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 128 9e-31
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 27 2.2
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 27 2.2
U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass... 27 2.2
Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical pr... 27 3.0
AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical ... 26 3.9
U80931-7|AAB38003.2| 526|Caenorhabditis elegans Organic anion t... 26 5.2
AF152095-1|AAF73198.1| 526|Caenorhabditis elegans multispecific... 26 5.2
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 25 6.8
U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical pr... 25 6.8
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 25 6.8
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 25 6.8
Z81056-7|CAB02909.1| 309|Caenorhabditis elegans Hypothetical pr... 25 9.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 25 9.1
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 25 9.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 25 9.1
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 128 bits (308), Expect = 9e-31
Identities = 55/84 (65%), Positives = 73/84 (86%)
Frame = +3
Query: 39 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVLSR 218
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV V SR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 219 ARVRKNTEARRKGRHCGFGKRRGT 290
R R+ EARRKGRH G+GKRRGT
Sbjct: 61 FRAREYEEARRKGRHTGYGKRRGT 84
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 135 ANTNSRQNIRKMIKDGLVIKKPVAVLSRARVRKNTEARRKGRHCG 269
++T+S +N+R ++ D +K V R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 147 SRQNIRKMIK-DGLVIKKPVAVLSRARVRKNTEARRKGR 260
S +N+RKMIK G V+ + + A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
gene nameprotein 162 protein.
Length = 2643
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 233 FANTSAGKDSNGFLDDQTILDHLTDVLSGISISDFIDLVWIKPHLFFTAS 84
+ + SA K G +D +TIL T V G+ ++ I + WI ++++ S
Sbjct: 1399 WTDLSADKIYTGLVDQRTILYQRTIVSYGVFNAEGIAVDWISGNIYWIDS 1448
>Z81508-5|CAB04138.1| 357|Caenorhabditis elegans Hypothetical
protein F20E11.7 protein.
Length = 357
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 63 RLAASVMRCGKKKVWLDPNEI 125
++A + + CG K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191
>Z72512-1|CAA96663.2| 326|Caenorhabditis elegans Hypothetical
protein R07B5.3 protein.
Length = 326
Score = 26.6 bits (56), Expect = 3.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -1
Query: 193 LMTRPSLIILRMFCLELVLAISLISFGSSHTFFLPHRITEAASLFCNFRELIL 35
L+ PS IL FC L A S++ + +F + LFC+ R LIL
Sbjct: 86 LVRIPSTTILTYFCATLDPAESIVPLLVAVYYFSNYSSQLYTVLFCSTRTLIL 138
>AL021503-9|CAA16417.2| 572|Caenorhabditis elegans Hypothetical
protein Y68A4A.5 protein.
Length = 572
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 57 QKRLAASVMRCGKKKVWLDPNEI 125
Q ++A + + CG +W DPN I
Sbjct: 321 QAQIAETSVTCGSDAIWQDPNGI 343
>U80931-7|AAB38003.2| 526|Caenorhabditis elegans Organic anion
transporter protein 1 protein.
Length = 526
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 230 ANTSAGKDSNGFLD--DQTILDHLTDVLSGISISDFIDLVW 114
++TS+ +D N D DQ +L+ LT S+ D ++L W
Sbjct: 5 SSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRW 45
>AF152095-1|AAF73198.1| 526|Caenorhabditis elegans multispecific
organic anion transporterprotein.
Length = 526
Score = 25.8 bits (54), Expect = 5.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 230 ANTSAGKDSNGFLD--DQTILDHLTDVLSGISISDFIDLVW 114
++TS+ +D N D DQ +L+ LT S+ D ++L W
Sbjct: 5 SSTSSEEDENFIKDVEDQKVLEVLTSHSKFKSLDDLVELRW 45
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1169 DEQEVRNRMSRLIDGVEVDDFVNLI 1193
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1191 DEQEVRNRMSRLIDGVEVDDFVNLI 1215
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 982 DEQEVRNRMSRLIDGVEVDDFVNLI 1006
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1289 DEQEVRNRMSRLIDGVEVDDFVNLI 1313
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1169 DEQEVRNRMSRLIDGVEVDDFVNLI 1193
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1191 DEQEVRNRMSRLIDGVEVDDFVNLI 1215
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 982 DEQEVRNRMSRLIDGVEVDDFVNLI 1006
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1289 DEQEVRNRMSRLIDGVEVDDFVNLI 1313
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 1000 DEQEVRNRMSRLIDGVEVDDFVNLI 1024
>U42835-1|AAA83585.1| 87|Caenorhabditis elegans Hypothetical
protein C04F6.2 protein.
Length = 87
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 253 FLRASVFLRTRARERTATGFLMTRPSLIILRMFCLELVLAISLISFG 113
F +VFL + + +L +P+L+ F ++L I L+ FG
Sbjct: 32 FPGTNVFLYLKHKASKTFAYLSGKPALMNFISFVVQLACCIFLLDFG 78
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 256 PFLRASVFLRTRARERTATGFLMTRPSL 173
PFLRA++ R + T F MTR SL
Sbjct: 166 PFLRATLERRIETEKETIDIFKMTRESL 193
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 25.4 bits (53), Expect = 6.8
Identities = 6/25 (24%), Positives = 18/25 (72%)
Frame = -3
Query: 191 DDQTILDHLTDVLSGISISDFIDLV 117
D+Q + + ++ ++ G+ + DF++L+
Sbjct: 960 DEQEVRNRMSRLIDGVEVDDFVNLI 984
>Z81056-7|CAB02909.1| 309|Caenorhabditis elegans Hypothetical
protein F09F3.13 protein.
Length = 309
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -3
Query: 170 HLTDVLSGISISDFIDLVWIK 108
HLTD+++ I I + D VW +
Sbjct: 231 HLTDLINSIFIFELSDKVWFR 251
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 176 LDHLTDVLSGISISDFIDLVWIKP 105
+D TDVL +SI + +++ W P
Sbjct: 1032 IDAPTDVLPSVSIDNTVNITWSPP 1055
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 176 LDHLTDVLSGISISDFIDLVWIKP 105
+D TDVL +SI + +++ W P
Sbjct: 1095 IDAPTDVLPSVSIDNTVNITWSPP 1118
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 176 LDHLTDVLSGISISDFIDLVWIKP 105
+D TDVL +SI + +++ W P
Sbjct: 1095 IDAPTDVLPSVSIDNTVNITWSPP 1118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,979,483
Number of Sequences: 27780
Number of extensions: 124793
Number of successful extensions: 429
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -