Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_B01
         (292 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   2.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    19   9.4  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              19   9.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   9.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    19   9.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  QDEFPKVTEEACSLC 79
           +DEF +  +  CSLC
Sbjct: 263 EDEFDEFGDSKCSLC 277


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 157 FCLELVLAISLISFGSSHTFFLPHRITEAASL 62
           + + L+L   LISF     F+LP    E  +L
Sbjct: 236 YTVNLILPTVLISFLCVLVFYLPAEAGEKVTL 267


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 182 SGHQETRCCPFPRSCSQKHRG 244
           +G   ++ CP PRS   K  G
Sbjct: 374 NGQTHSQLCPTPRSTHLKVSG 394


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 173 QGWSGHQETRCCPFPRS 223
           + W G  + R  P PRS
Sbjct: 918 RAWPGDSDIRQRPIPRS 934


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 238 VFLRTRARERTATGFLMTRPSLIILRMFCLELVLAIS 128
           +FL T++    +  F++       L MFC+   + I+
Sbjct: 76  IFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMVIN 112


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = +3

Query: 99  KVWLDPNEINEI 134
           +++LD NE+N++
Sbjct: 89  EIYLDENEVNKL 100


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 157 FCLELVLAISLISFGSSHTFFLPHRITEAASL 62
           + + L++    ISF S   F+LP    E  SL
Sbjct: 239 YTVNLIIPCVGISFLSVLVFYLPSDSGEKVSL 270


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -1

Query: 238 VFLRTRARERTATGFLMTRPSLIILRMFCLELVLAIS 128
           +FL T++    +  F++       L MFC+   + I+
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISDFLMMFCMSPPMVIN 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,862
Number of Sequences: 438
Number of extensions: 1339
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)