Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A23
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.43 
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   5.3  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   9.3  
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    24   9.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   9.3  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    24   9.3  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    24   9.3  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.43
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 77  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 184
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 35  MAVRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNG 145
           MAV   ++  +V+   ++  K LL+  CK + + + G
Sbjct: 91  MAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 143 GHNYRRQLLAKGQVSGHPAAT 205
           G N+RRQLL  G+  G  AA+
Sbjct: 854 GDNWRRQLLENGKSFGLEAAS 874


>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 246 KQRNGQRRIRSSITRRGLCDREDS 317
           ++RNG+R  RS++ R+   D  D+
Sbjct: 178 RERNGKRTSRSTLDRKRFHDASDT 201


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 59  LAMVVCIGHVHSKSLLNLSCKQIKDFVNGHN 151
           L+++V I   H +S L    K IKDF N H+
Sbjct: 872 LSILVLIVRQHIRSFLPDLFKLIKDFWNPHS 902


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 132 ISSTDTIIGDNYW 170
           I+  DT  GDNYW
Sbjct: 229 ITQCDTATGDNYW 241


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 147  CPLTKSLICLHDKFSRDLLWT 85
            CP ++    L  +F RD LW+
Sbjct: 1352 CPGSRQFTVLQSRFQRDHLWS 1372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,314
Number of Sequences: 5004
Number of extensions: 28376
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)