Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A23
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical pr...    35   0.017
Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical pr...    33   0.091
Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical pr...    33   0.091
Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical pr...    31   0.28 
Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z47357-10|CAA87427.3|  426|Caenorhabditis elegans Hypothetical p...    26   7.9  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    26   7.9  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    26   7.9  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      26   7.9  
AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical ...    26   7.9  
AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z70307-5|CAA94331.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.5 protein.
          Length = 209

 Score = 35.1 bits (77), Expect = 0.017
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
 Frame = +2

Query: 41  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV----SGHPAATG 208
           ++  L+LA+V C+G  H++   +   KQ    VN HN  R  +AKG+     +   +AT 
Sbjct: 1   MQTALVLALV-CVG-AHAQ--FSEGGKQ--SMVNAHNAVRSSIAKGEYVAKGTKKDSATN 54

Query: 209 RKYMVWDEELXXXXXXXXXXXXXFHNPERTLRSGRFQTGENLYW-YSKTDST 361
              M WD  L              H+P+++        GENL+W YS +  T
Sbjct: 55  MLKMKWDNSLAQSAQNYANGCPMQHSPDKSY-------GENLFWAYSSSPIT 99


>Z70308-2|CAA94349.1|  212|Caenorhabditis elegans Hypothetical
           protein F49E11.5 protein.
          Length = 212

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +2

Query: 146 HNYRRQLLAKGQ-VSGH---PAATGRKYMVWDEELXXXXXXXXXXXXXFHNPERTLRSGR 313
           HNY R  +A G+ V+G+   P+A+    ++WD  L              H+  R      
Sbjct: 34  HNYLRSQIALGKYVAGNSTKPSASNMMKLIWDTTLETTAQDYSTGCPTGHSASRA----- 88

Query: 314 FQTGENLYWYS 346
              GEN+YW++
Sbjct: 89  -NIGENMYWWT 98


>Z70307-2|CAA94335.1|  208|Caenorhabditis elegans Hypothetical
           protein C39E9.2 protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.091
 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 137 VNGHNYRRQLLAKGQV----SGHPAATGRKYMVWDEELXXXXXXXXXXXXXFHNPERTLR 304
           +N HN  R  +AKG      +  PAA+    M WD  +             + N   T  
Sbjct: 28  LNVHNTLRSRIAKGTYVAKGTAKPAASDMLKMKWDATVAASAQA-------YANKCPTGH 80

Query: 305 SGRFQTGENLYWY 343
           SG    GENLYWY
Sbjct: 81  SGAAGLGENLYWY 93


>Z70308-6|CAA94344.1|  207|Caenorhabditis elegans Hypothetical
           protein F49E11.10 protein.
          Length = 207

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +2

Query: 137 VNGHNYRRQLLAKGQ--VSGHPAATGRKY--MVWDEELXXXXXXXXXXXXXFHNPERTLR 304
           +N HN  R  +AKG     G   + G     M WD  +             + N   T  
Sbjct: 27  INAHNTLRSKIAKGTYVAKGTQKSPGTNLLKMKWDSAVAASAQN-------YANGCPTGH 79

Query: 305 SGRFQTGENLYWYSKTDSTYKLN 373
           SG    GENLYWY  + S   LN
Sbjct: 80  SGDAGLGENLYWYWTSGSLGDLN 102


>Z77659-1|CAB01164.1|  401|Caenorhabditis elegans Hypothetical
           protein F23B12.1 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 186 DT*PLASNCLL*LCPLTKSLICLHDKFSRDLL 91
           D   LA NC+     ++K +IC+H   S DL+
Sbjct: 217 DAFQLAFNCMPLCAVVSKKIICMHGGISEDLI 248


>Z70307-4|CAA94330.1|  209|Caenorhabditis elegans Hypothetical
           protein C39E9.4 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +2

Query: 137 VNGHNYRRQLLAKG--QVSG--HPAATGRKYMVWDEELXXXXXXXXXXXXXFHNPERTLR 304
           V+ HN  R  LA G   ++G   PA +  + M WD  L             + N   T  
Sbjct: 29  VDLHNSFRSKLATGTYSINGTLKPAGSNIRKMSWDSTLATSAQT-------YANTCPTGF 81

Query: 305 SGRFQTGENLYWYSKTDSTYKLNV 376
           S    TGENLYW + + +   L++
Sbjct: 82  SNTQGTGENLYWRTTSANISGLDI 105


>AF016661-5|AAB66052.1|  207|Caenorhabditis elegans Hypothetical
           protein F02E11.5 protein.
          Length = 207

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
 Frame = +2

Query: 41  VRALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKG-----QVSGHPAAT 205
           +RAL++LA+V  +  V+ +     S    K  V+ HN  R  +AKG     +    P + 
Sbjct: 1   MRALILLAVVASVS-VYGQ----FSKAGQKAIVDAHNTLRSSIAKGTYVANKTRKEPGSN 55

Query: 206 GRKYMVWDEELXXXXXXXXXXXXXFHNPERTLRSGRFQTGENLYW 340
             K M WD  +              H        G+ + GENLYW
Sbjct: 56  ILK-MKWDPTIAKSAQAYANTCPTGH--------GKSKYGENLYW 91


>Z47357-10|CAA87427.3|  426|Caenorhabditis elegans Hypothetical
           protein ZK1128.1 protein.
          Length = 426

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 299 LRSGRFQTGENLYWYSKTD 355
           +R  + +TG N+YWY   D
Sbjct: 175 IRKNKTRTGVNIYWYKSID 193


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 104 LNLSCKQIKDFVNGHNYRRQLLAKGQVSGHPAATGRKYMVWDEEL 238
           +N    +  +FVN   Y+R L    QVS +   T R+Y +   E+
Sbjct: 129 VNTEMGEFNNFVNQAPYQRALTRVSQVSENQDPTNRQYPMTAPEI 173


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 171 ASNCLL*LCPLTKSLIC 121
           +SNC+L L PL  SL+C
Sbjct: 134 SSNCVLLLAPLINSLVC 150


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 104 LNLSCKQIKDFVNGHNYRRQLLAKGQVSGHPAATGRKYMVWDEEL 238
           +N    +  +FVN   Y+R L    QVS +   T R+Y +   E+
Sbjct: 129 VNTEMGEFNNFVNQAPYQRALTRVSQVSENQDPTNRQYPMTAPEI 173


>AC024839-8|AAF60825.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.8 protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 368 VCMCYRSLNTNTNSHQSGIFPIAKSSPGYGTSYSA 264
           +C   R LNT+TN +   IF   K S   G  Y +
Sbjct: 251 LCNRARELNTSTNPNYRNIFNNQKQSTSMGRVYQS 285


>AC024839-7|AAF60827.1|  383|Caenorhabditis elegans Hypothetical
           protein Y59E9AR.2 protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 368 VCMCYRSLNTNTNSHQSGIFPIAKSSPGYGTSYSA 264
           +C   R LNT+TN +   IF   K S   G  Y +
Sbjct: 251 LCNRARELNTSTNPNYRNIFNNQKQSTSMGRVYQS 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,371
Number of Sequences: 27780
Number of extensions: 163184
Number of successful extensions: 402
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)