Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A23
         (380 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   3.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   6.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   8.5  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    20   8.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 252 RNGQRRIRSSITRRGLCDREDSRLVR 329
           R G+  + S++   GLC  ++ RLVR
Sbjct: 7   RLGRILLISAVFCVGLCSEDEERLVR 32


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 94  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 132 ISSTDTIIGDNYWLRVRYQDTLLQLEGNIWCGMKN 236
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 94  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 98  SLLNLSCKQIKDFVNGHNYRR 160
           S L+ SC    ++ N +NY++
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKK 325


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 44  RALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNY 154
           RA + +    C G V  +      CK  + F +G  Y
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYY 435


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 111 KFSRDLLWTCPIHTT 67
           +F RDL+WT  ++ +
Sbjct: 91  QFVRDLIWTPTVYVS 105


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 129 KISSTDTIIGDNYWLRVRYQDTLLQLEGNI 218
           ++++ + I  DN +     Q   L L+GNI
Sbjct: 41  ELANRNAIQSDNVFANCELQKLRLLLQGNI 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,208
Number of Sequences: 438
Number of extensions: 2355
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)