Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A22
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5 |Schizosaccharom... 46 1e-06
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 27 0.56
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp... 26 1.3
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 26 1.7
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 26 1.7
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 2.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 2.2
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 2.2
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 3.9
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.8
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 24 6.8
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 23 9.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 23 9.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 23 9.0
>SPBC215.02 |bob1|gim5, gim5|prefoldin subunit 5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 154
Score = 46.4 bits (105), Expect = 1e-06
Identities = 29/68 (42%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 128 VDLSKLSLPHLAQLKEQLDQELVLFQESLQTLQMAKNKFAESGESV-DRMTPGVKGNPIL 304
VDL+ LSL L+++ +QLD EL S L A+ KF E +V D + G +L
Sbjct: 8 VDLTSLSLEQLSEVIKQLDSELEYLSTSYGQLGRAQLKFRECLANVNDAVRAENDGKEVL 67
Query: 305 VPLTSSMY 328
VPLTSS+Y
Sbjct: 68 VPLTSSLY 75
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 27.5 bits (58), Expect = 0.56
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -2
Query: 314 SEVQVWDFLLLLGSFYLQTLQILQ 243
+++++WD L LLG QT+++LQ
Sbjct: 331 TQLRIWDLLFLLGGSKGQTVRLLQ 354
>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 88
Score = 26.2 bits (55), Expect = 1.3
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 264 TDSPDSANLFLAICNVCRDS*NRTNSWSNCSFN*AKCGKL 145
TD+ ANL A+ N + + +T S + +++ A+ GKL
Sbjct: 48 TDTAQCANLVAALENCMKTTHRKTKSENTINYHLARLGKL 87
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 1.7
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 254 QILQIC--FWPFAMSAGILEIELIPGPTVPLI 165
+I+Q C F P +E++++PG +VPL+
Sbjct: 286 EIIQECVGFRPSRKGGARVELDVVPGTSVPLV 317
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 1.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 243 NLFLAICNVCRDS*NRTNSWSNCSFN*AKCGKLSLLKSTCCPVEDDAILEN 91
+LFL + + ++T++ S CS CG + TCC V I N
Sbjct: 5 SLFLTVLTLALSLVSKTSA-SQCSPRYGTCGGIYYDGPTCCVVGSSCIYSN 54
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 2.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 182 PTVPLIEPSVVNLAYLNQPAVQLKMMPFWKTITLKF 75
PT+ L + ++N A L+Q + + +PFWK++T F
Sbjct: 636 PTITLGKNDLLN-AILSQN-LWFRSLPFWKSMTTSF 669
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 2.2
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 KEQLDQELVLFQESLQTLQM-AKNKFAESGESVDRMTPGVKGNPILV 307
K +L+++L+ FQE L+TL++ + ++ S + P ++G P+L+
Sbjct: 181 KLELNEDLLWFQE-LRTLKLKSPTNVLQTHSSQTHVYPYIRGLPVLL 226
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 2.2
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 KEQLDQELVLFQESLQTLQM-AKNKFAESGESVDRMTPGVKGNPILV 307
K +L+++L+ FQE L+TL++ + ++ S + P ++G P+L+
Sbjct: 181 KLELNEDLLWFQE-LRTLKLKSPTNVLQTHSSQTHVYPYIRGLPVLL 226
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 24.6 bits (51), Expect = 3.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 227 FAMSAGILEIELIPGPTVPLIEPSVVNLAYLNQPA 123
+++ G + +IP T P+I+P+V A N PA
Sbjct: 647 YSVDVGKEHMSMIPNQTAPMIQPNVPVSA--NSPA 679
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 21 RLYQFVLKDCGYKHINFIKL*RYS-FPKWHHLQLDS 125
R+Y++++K Y+ F +YS F +HHL L S
Sbjct: 189 RVYEYLIK-VSYEENTFFIARKYSDFSHFHHLLLKS 223
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 23.8 bits (49), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 323 LNWSEVQVWDFLLLLGSFY 267
L+WS ++WD LL + Y
Sbjct: 173 LDWSYTEIWDLLLETNTKY 191
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -2
Query: 308 VQVWDFLLLLGSFYLQTLQILQ 243
+ VW F L SFY + +QI++
Sbjct: 177 LMVWAFESFLKSFYFKYIQIIE 198
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 324 IELVRGTSMGFPFTPGVILSTDSPDSANLF 235
+E +G +M F +TP + D+P+ F
Sbjct: 328 VEPAKGNTMSFSWTPDKPIKFDTPEKKFTF 357
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = -2
Query: 308 VQVWDFL--LLLGSFYLQTLQILQICFWP 228
V WD + L SF ++ QIL +CF P
Sbjct: 247 VHCWDVKTGVSLQSFQFRSSQILSLCFRP 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,409
Number of Sequences: 5004
Number of extensions: 26768
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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