Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A22
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   3.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   5.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   8.9  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 204 KNPCRHCKWPKTNLQN 251
           KN CRH    K+++QN
Sbjct: 571 KNQCRHYLDAKSSVQN 586


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 98  WKTITLKFDKIYMLISTI 45
           WK + +  D+I++ I T+
Sbjct: 539 WKYVAMVLDRIFLWIFTV 556


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 119 GQQVDLSKLSLPHLAQLKEQLDQELVLFQESLQTLQM 229
           G+Q  L++ +L  L  LKE      VLF  SL+ + +
Sbjct: 158 GEQ-PLTEQNLEELRDLKETYPFNPVLFISSLENISL 193


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 119 GQQVDLSKLSLPHLAQLKEQLDQELVLFQESLQTLQM 229
           G+Q  L++ +L  L  LKE      VLF  SL+ + +
Sbjct: 196 GEQ-PLTEQNLEELRDLKETYPFNPVLFISSLENISL 231


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = -2

Query: 137 LNQPAVQLKMMPFWKTITLKFDKIYMLISTIF 42
           L    +  K+   WK   +  D++ ++I T+F
Sbjct: 506 LKSEELNAKVTNDWKFAAMVIDRMCLIIFTLF 537


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 281 LGSFYLQTLQILQICFWPFAMSAGIL 204
           LGSFY+    ++Q+ +  F  +  I+
Sbjct: 208 LGSFYIPLFVMIQVYYKIFCAARRIV 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,791
Number of Sequences: 438
Number of extensions: 1636
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)