Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A21
(244 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 26 0.80
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 1.9
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 24 2.4
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 24 3.2
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 24 3.2
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 23 4.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 23 4.3
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 23 5.6
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 23 5.6
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 23 5.6
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 23 7.5
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 23 7.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 7.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 7.5
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 22 9.9
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 22 9.9
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 22 9.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 22 9.9
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 22 9.9
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 22 9.9
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 0.80
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 184 TICSSDHCGSWFASSL*KVSCLGGVNLKPSET 89
T S HCG+W AS +S G V ++ SET
Sbjct: 13 TFASVSHCGNWIAS----LSRSGHVLIRNSET 40
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 24.6 bits (51), Expect = 1.9
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Frame = -1
Query: 217 IVNPLNLD*ADTICS--SDHCGSWFASSL*KVS---CLGG-VNLKPSETPGFLFRKEP 62
++N L D TI S + W SS + CL G +NLKPSE LF + P
Sbjct: 825 LINLLYTDIFSTISSPRAKAAKMWLISSFCAMKTLICLRGFLNLKPSELERELFSRSP 882
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 12 GKCEMIPIEWVTRRLATGSFLKRNPGV 92
GKCE+I + W+ + L R PG+
Sbjct: 1265 GKCELIEMIWMNIEQSIVYQLLRKPGI 1291
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 23.8 bits (49), Expect = 3.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 93 SEGFRFTPPKQETFYKDDANHDPQWSEEQIV 185
S+ F TPP + + +D +H P +S +++V
Sbjct: 355 SKQFFRTPPPGLSDFVNDLSHHPIFSNDEVV 385
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 135 YKDDANHDPQWSE 173
Y DAN DP WSE
Sbjct: 498 YGTDANGDPLWSE 510
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 23.4 bits (48), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 91 FPKALDSHRPSKKP 132
+P++LD H SKKP
Sbjct: 427 YPQSLDDHLSSKKP 440
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 117 PKQETFYKDDANHDPQWSE 173
PK E YKD+A W+E
Sbjct: 296 PKFEPLYKDEAPEMEDWNE 314
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.0 bits (47), Expect = 5.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 59 SEASRYPFYRDH 24
+ +SRYPFY+ H
Sbjct: 22 TNSSRYPFYKKH 33
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1379
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 105 RFTPPKQETFYKDDANHDPQWSEEQIVSAQSK 200
+ TP +ET Y HD S +V+ + K
Sbjct: 973 KLTPSIEETSYSSSKAHDASLSAATLVANKDK 1004
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 103 KPSETPGFLFRKEPVAR 53
KPSETP F F K V +
Sbjct: 854 KPSETPPFSFNKPLVEK 870
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -2
Query: 192 ELTRSALRTIAGRGLRRPYRRFLAWAV 112
+LTR IAG R Y L W +
Sbjct: 134 DLTRDVTHLIAGTSSGRKYEYALKWKI 160
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 22.6 bits (46), Expect = 7.5
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +3
Query: 105 RFTPPKQETFYKDDANHDPQWSEEQ 179
R+TP + NH P ++ EQ
Sbjct: 321 RYTPNQPSYLESKPGNHQPSYTSEQ 345
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 111 TPPKQETFYKDDANHDPQWSEEQIVSAQSK 200
T T +DD + + EE+IV+A+ K
Sbjct: 352 TDNNTNTILEDDEKDNDEEEEEEIVNAREK 381
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 22.6 bits (46), Expect = 7.5
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 111 TPPKQETFYKDDANHDPQWSEEQIVSAQSK 200
T T +DD + + EE+IV+A+ K
Sbjct: 352 TDNNTNTILEDDEKDNDEEEEEEIVNAREK 381
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 22.2 bits (45), Expect = 9.9
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 104 KAFGNAWISLQEGASSEASRY 42
K N W+ + E A E S+Y
Sbjct: 44 KTINNFWVVVLEAAGDEISQY 64
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 124 KKPSIRTTQTTTRNGPKSRSCQLSP 198
KKPS + T+ T + +SRS SP
Sbjct: 1258 KKPSSKDTKIETPSREQSRSQTASP 1282
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 22.2 bits (45), Expect = 9.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 145 SSL*KVSCLGGVNLKPSETP 86
+SL VS L GVNL S TP
Sbjct: 828 ASLVAVSELTGVNLSASSTP 847
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/46 (23%), Positives = 20/46 (43%)
Frame = +3
Query: 42 VTRRLATGSFLKRNPGVSEGFRFTPPKQETFYKDDANHDPQWSEEQ 179
V R+ F+K N GV +G + Y++ ++ +EQ
Sbjct: 843 VKNRMTCQDFIKNNRGVDDGANLSDSFLTEVYEEIQKNEIVLKDEQ 888
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 22.2 bits (45), Expect = 9.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -1
Query: 187 DTICSSDHCGSWFA 146
D I + DHC +W A
Sbjct: 306 DDIYTFDHCNNWIA 319
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 22.2 bits (45), Expect = 9.9
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = +3
Query: 51 RLATGSFLKRNPGVSEGFRFTPPKQETFYKDDANHDPQWSEEQIVSAQSKFN 206
R A + LKR +G F P K + A P+W + + Q +N
Sbjct: 934 REAEAAQLKRQKK-GKGMLFDPSKPKRLTVFVAEKFPEWQAQYVALLQKYYN 984
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,589
Number of Sequences: 5004
Number of extensions: 19942
Number of successful extensions: 52
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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