Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A21
(244 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0083 + 28256844-28258760 32 0.074
01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099... 29 0.69
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384... 28 1.2
05_04_0154 - 18549806-18550161,18550271-18550907 27 2.1
01_05_0658 - 24043655-24043945,24044003-24044257,24044359-240445... 26 3.7
12_02_1095 - 26036283-26036481,26036582-26036772,26037069-260381... 26 4.9
12_01_0931 + 9245777-9245806,9245972-9246065,9246188-9246220,924... 26 4.9
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 26 4.9
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 26 4.9
01_06_0576 - 30365903-30366328,30367262-30367640,30368215-303684... 26 4.9
01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041 26 4.9
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 25 8.5
02_05_0779 + 31702039-31702977 25 8.5
>11_08_0083 + 28256844-28258760
Length = 638
Score = 31.9 bits (69), Expect = 0.074
Identities = 24/66 (36%), Positives = 32/66 (48%)
Frame = +3
Query: 33 IEWVTRRLATGSFLKRNPGVSEGFRFTPPKQETFYKDDANHDPQWSEEQIVSAQSKFNGL 212
IE RRL S R GV FR K ET ++D + DP+ EE+++ +GL
Sbjct: 413 IEETGRRL---SICARQFGVPFKFRAIAAKWETVRREDLHLDPEEEEEEVLVVNC-LHGL 468
Query: 213 TIGQDE 230
QDE
Sbjct: 469 NTLQDE 474
>01_06_1457 +
37508187-37508421,37509012-37509109,37509791-37509904,
37510361-37510426,37510659-37510745,37510902-37511012
Length = 236
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 104 KAFGNAWISLQEGASSEASRYPFYRDHFT 18
KAFG++W + + A+ A ++PF D T
Sbjct: 118 KAFGDSWKAATKDATDAAQQWPFLTDALT 146
>03_01_0510 +
3841630-3844089,3844235-3844358,3844641-3844786,
3844861-3844958,3845313-3845502
Length = 1005
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 130 VSCLGGVNLKPSETPGFLFRKEPVARRLVTHSIGIISHFP 11
+S L G +LK S PG + R+EP A L+ +S+ H P
Sbjct: 248 LSPLHGSSLKVSRRPGVIGRREPQA--LLEYSVNSSEHGP 285
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 88 AFPKALDSHRPSKKPSIRTTQTTTRNGPKSRSCQLSPNSMD 210
AFP A + +KKP + +QTTT S S +P S D
Sbjct: 168 AFPAATTAS--AKKPRLLGSQTTTTTSRTSTSNATTPRSFD 206
>01_05_0658 -
24043655-24043945,24044003-24044257,24044359-24044530,
24044617-24044844,24045688-24045821,24045908-24045991,
24046202-24046492,24046571-24046903,24047002-24047246,
24047476-24047742,24048305-24048465,24048556-24048872,
24048966-24049247,24049325-24049626,24049699-24049789,
24049881-24049934,24050028-24050104,24050192-24050367,
24051331-24051540,24051626-24052029
Length = 1457
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 129 TFYKDDANHDPQWSEEQIVSAQSKFNGLTIGQD 227
T+ K D P SEE++ Q+ NG + D
Sbjct: 777 TYLKPDGKSQPSISEEELKEKQANINGNVLDVD 809
>12_02_1095 -
26036283-26036481,26036582-26036772,26037069-26038198,
26038275-26038431,26038595-26038670,26038744-26038866,
26038950-26039114,26039208-26039298,26039622-26039706,
26039793-26039948,26040045-26040101,26040179-26040277,
26040523-26040635,26041022-26041079
Length = 899
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +3
Query: 102 FRFTPPKQETFYKDDANHDPQWSEEQIVSAQSKFNGLTIG 221
F PP QE +D HD +W I Q K + LT G
Sbjct: 163 FSQQPPAQELIARD--LHDNEWKFRHIFRGQPKRHLLTTG 200
>12_01_0931 +
9245777-9245806,9245972-9246065,9246188-9246220,
9246393-9246539,9248002-9248132,9248289-9248426,
9248570-9248668,9249020-9249238
Length = 296
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = +3
Query: 141 DDANHDPQWSEEQIVSAQSK 200
DDA DP SEE SAQSK
Sbjct: 236 DDAVTDPSVSEELYTSAQSK 255
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 143 VLIEGFLLGRCESKAFGNAWISLQEGASSEASRYPFYRDHFTFPS 9
V++ GF+ GR W+ ASSE+ Y YRD+ PS
Sbjct: 271 VIVPGFIGGRMVK------WLKRIIVASSESESYYHYRDNRVLPS 309
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 94 PKALDSHRPSKKPSIRTTQTTTRNGPKSRSCQLSPNSMD 210
P + SKKP + T+QTTT + S S +P S D
Sbjct: 687 PATASAAAASKKPRLLTSQTTTSH--TSTSNATTPRSFD 723
>01_06_0576 -
30365903-30366328,30367262-30367640,30368215-30368459,
30368819-30369039,30369786-30370074
Length = 519
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 53 PRYWLLPEEKSRRFRRL*IHTAQARNLL*GRRKPRPAMVRRAD 181
P YW LP E +RR R + + R +L G R VR +
Sbjct: 249 PGYWYLPIENNRRIREI---DQEIRTILRGIIVKRDKAVRNGE 288
>01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041
Length = 301
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -2
Query: 198 WTELTR---SALRTIAGRGLRRPYRRFLAWA 115
WT + R +A R I G R+P RR WA
Sbjct: 177 WTHMLRVRSTATRVILGMTARKPVRRRCIWA 207
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 52 ASLLAPS*REIQAFPKALDSHRPSKKPSIRTTQTTTRNGPKSRSCQLS 195
AS+LA + ++ K ++ S +PS R +TT R KS ++S
Sbjct: 276 ASILAETIAYLKELEKRVEELESSSQPSPRPMETTRRRCCKSTGKKVS 323
>02_05_0779 + 31702039-31702977
Length = 312
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 94 PKALDS-HRPSKKPSIRTTQTTTRNGPKSRSCQL 192
PKA+ S RPS ++ +T+R+GP S L
Sbjct: 29 PKAICSPSRPSASEPVKRRHSTSRSGPPPPSAAL 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,240,804
Number of Sequences: 37544
Number of extensions: 135786
Number of successful extensions: 374
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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