Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A19
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   0.61 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    25   1.4  
SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    24   3.2  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    24   4.3  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    23   5.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    23   7.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   9.9  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    23   9.9  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 0.61
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 159  LNEKKRHTIDK*RMHPVWLLDKNNNND 239
            L+E +    D+  +   +LLDKNNNND
Sbjct: 3251 LSEFQHQKFDEVEIPGQYLLDKNNNND 3277



 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 132  EVLLSRYYFFICLSDI*V*NNQKVINA 52
            EV++S +YF  CLS++   +N K+ +A
Sbjct: 1052 EVIISPHYFAHCLSEVVCNDNSKMGDA 1078


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 97  TNEKIIPRQQYFKSRFLTDNY*MRRNVIQLTNDACILCGYLTKTTIMTPVAISD 258
           TNE++ PR  Y   RF+     +++ V+  T  +  + G L   ++ +PV   D
Sbjct: 547 TNERVRPRAWYLFYRFVKS---IKKQVVNYTESSLAMLGDLLNISV-SPVTDMD 596


>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +3

Query: 150 GQLLNEKKRHTIDK*RMHPVWLLDKNNNNDTSSN 251
           G   +++   TID+ + +   L+ K++ ND S+N
Sbjct: 105 GSFKDKRPTDTIDRRKKYLKQLMSKSSGNDVSTN 138


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 155 LSVKKRDLKYCCLGIIFSFVYRIFES 78
           L+V+K+ +KYCC    +S     FES
Sbjct: 351 LNVQKKCIKYCCTSNGWSLADIHFES 376


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 13  RGLTKHSKSIVIRSINYLLIILDSNIR*TNEKIIPRQQYFKSRFLTDNY*MRRNVIQLT 189
           + L K+S S+++  INY     D     T    +   +YF SRFL+ +Y ++    QL+
Sbjct: 242 KNLPKNSASLILPPINY-----D-----TFHSFLDSLKYFLSRFLSTDYRIQLTYRQLS 290


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -3

Query: 242 GVIIVVFVK*PHRMHASFVNCMTFLLIQ*LSVKKRDLKYCCLGIIFS 102
           G I++ F +     H SF + +   L     + K DL+  CL  + +
Sbjct: 643 GNIVITFFQQDEDFHLSFDSWLGVSLPTEAVIAKEDLREACLNYLIN 689


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 196  ACILCGYLTKTTIMTPVAIS 255
            AC +  Y T   I+TPV +S
Sbjct: 1855 ACFISAYDTPAKIVTPVYVS 1874


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 172 NVIQLTNDACILCGYLT 222
           ++I LT   C+LCG +T
Sbjct: 62  SLIDLTYKLCLLCGIVT 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 966,963
Number of Sequences: 5004
Number of extensions: 15954
Number of successful extensions: 37
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)