Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A19
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338...    29   0.39 
03_02_0142 + 5877480-5879663,5879783-5879898,5880749-5882419,588...    25   8.3  
02_05_1262 + 35312313-35312343,35312840-35312886,35313614-353136...    25   8.3  

>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
            3384640-3384709,3385878-3386002,3387128-3387268,
            3387362-3387519,3387644-3387803,3390136-3390213,
            3390326-3390385,3390473-3390528,3391886-3392090,
            3394107-3394192,3394296-3394406,3394536-3394607,
            3395453-3395538,3395730-3395878,3396107-3396250,
            3396335-3396442,3396997-3397027,3397609-3397713,
            3398283-3398407,3398807-3398950,3399073-3399177,
            3400748-3400799,3401549-3401696,3401936-3402130,
            3402404-3402647,3403152-3403259,3403887-3404034,
            3405467-3405525,3405876-3405945,3407008-3407333,
            3407666-3409204,3410526-3410733,3410870-3410906,
            3411024-3411072,3411143-3411271
          Length = 2025

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 146  KKRDLKYCCLGIIFSFV-YRIF 84
            +K+ L+YCCLG IF  + Y +F
Sbjct: 1049 EKKSLRYCCLGTIFEIMSYELF 1070


>03_02_0142 +
           5877480-5879663,5879783-5879898,5880749-5882419,
           5882570-5882618,5882703-5882941,5883073-5883174,
           5883634-5883862
          Length = 1529

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 82  SNIR*TNEKIIPRQQYFKSRFLTDN 156
           SN+   NEK++ R++ FKSR + ++
Sbjct: 721 SNMASVNEKMLMREEQFKSRHVPNS 745


>02_05_1262 +
           35312313-35312343,35312840-35312886,35313614-35313660,
           35313740-35313842,35313924-35314691
          Length = 331

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 19  LTKHSKSIVIRSINYLLIILDSNIR*TNEKIIPRQQYFKSRFLTDNY*MRRNVI 180
           L + ++S    S+N  L  + S I   +EKII  ++ FK ++ T+N   + N I
Sbjct: 243 LQEMNESSAAESLNSELAEVTSAIETVSEKIIMEEEKFK-KWRTENIRRKHNYI 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,375,868
Number of Sequences: 37544
Number of extensions: 75660
Number of successful extensions: 101
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)