Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A19
         (271 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   0.51 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    20   6.2  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    20   6.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   8.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   8.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.51
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 111 YFFICLSDI*V*NNQKVINAPYNNTFAMFCQS 16
           Y F+    +   +N  VIN   +N   MFC S
Sbjct: 75  YIFLSTKSLRTPSNLFVINLAISNFLMMFCMS 106


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 111 YFFICLSDI*V*NNQKVINAPYNNTFAMFCQS 16
           Y F+    +   +N  VIN   ++   MFC S
Sbjct: 41  YIFLSTKSLRTPSNLFVINLAISDFLMMFCMS 72


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -2

Query: 51  PYNNTFAMFCQSSCRI 4
           PYN  +  FC +  R+
Sbjct: 445 PYNKNYTKFCSTEKRL 460


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 126 ILQIALFNG-QLLNEKKRHTIDK 191
           IL  AL  G    NEK++HT +K
Sbjct: 63  ILPDALSTGCNKCNEKQKHTANK 85


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 126 ILQIALFNG-QLLNEKKRHTIDK 191
           IL  AL  G    NEK++HT +K
Sbjct: 63  ILPDALSTGCNKCNEKQKHTANK 85


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -2

Query: 129 VLLSRYYFFICLSDI 85
           +LLS+  FF+ +S+I
Sbjct: 273 ILLSQTMFFLLISEI 287


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 225 NNNNDTSSNIR*NN 266
           NNNN+ ++N   NN
Sbjct: 239 NNNNNNNNNNNNNN 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,602
Number of Sequences: 438
Number of extensions: 1301
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)