Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A18
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 33 0.098
01_03_0055 + 12074512-12076155 29 1.2
06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756... 29 1.6
08_01_0029 - 216526-216621,216706-216854,217489-217594,218650-21... 28 2.8
04_04_1377 - 33064906-33065607 28 2.8
01_07_0326 - 42750189-42750965 27 4.9
05_05_0266 - 23694466-23696787,23696885-23697187 27 6.4
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 27 8.5
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 27 8.5
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 33.1 bits (72), Expect = 0.098
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 212 RQHEHRIHSESRAHQHNHRRPRGDD 286
R+ + HS SR+H+H+H R GDD
Sbjct: 1225 RRSSKKDHSSSRSHRHHHHRSSGDD 1249
>01_03_0055 + 12074512-12076155
Length = 547
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 224 HRIHSESRAHQHNHRRPRGDD 286
HR+H H +H+R RGDD
Sbjct: 357 HRVHHHHHHHNGHHKRRRGDD 377
>06_03_1344 -
29472139-29473292,29474478-29475386,29475504-29475618,
29476017-29476218,29477177-29477296,29477431-29477582,
29478177-29478461
Length = 978
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 191 RAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEQAHTVSC*LSRDRLAK 337
R+ + R E R +S+S + +HN R +++A+T RDR +K
Sbjct: 514 RSNRHSRRSREKRYYSDSSSPEHNRHSGRSKEKRAYTDLSTHDRDRHSK 562
>08_01_0029 -
216526-216621,216706-216854,217489-217594,218650-218841
Length = 180
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 331 KPISAQLAGNGMGLFIITPWTSVVMLVSS*FGVNSMFMLTLLFLR 197
K S+Q + GLFI W+ ++L++ VN++ L LL +R
Sbjct: 118 KSFSSQNYFDPQGLFISVVWSGPLLLITILILVNTLVTLCLLMVR 162
>04_04_1377 - 33064906-33065607
Length = 233
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 158 GDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEQAH 298
G RV + + G+ A E + H H H H +P G+++ H
Sbjct: 157 GSRVDALQTGMMVAPTT-HHRERQKHHHHHHHHHPHLQPHGEEQHHH 202
>01_07_0326 - 42750189-42750965
Length = 258
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALPSVLTAPGHHDSLHG 141
G G+LL+ SEF A V V Q+ + + A G + G
Sbjct: 218 GPIGDLLVSSEFSKMASVLVMQQYVITAAAAAGGARRAADG 258
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 263 GYAGELLIRSEFDVHADVTVSSQHALPSVLTAP 165
G G+LL+ SEF A V V Q+ + + L P
Sbjct: 795 GPIGDLLVSSEFSKMASVLVMQQYVITAPLPPP 827
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 26.6 bits (56), Expect = 8.5
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +2
Query: 161 DRVQSRR*GVRAAKKQ*RQH--EHRIHSESRAHQHNHRRPRGDDEQAHTVSC*LSRDR 328
DR + RR R K + R EHR SE R H R D + H RDR
Sbjct: 84 DRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRERSDDRDRRRGHDSERRRDRDR 141
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 26.6 bits (56), Expect = 8.5
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 102 EAKFYKDCGSQLATVQTVMV-TGCSQDARECVLRRNSNVSMNIEFTPNQELTSITTDVHG 278
EA F CG+ + Q + T +DA L N+ I PN T TTD+
Sbjct: 156 EALFNTSCGALVFKDQYIEASTSLPRDAALYGLGENTQPG-GIRLRPNDPYTIYTTDISA 214
Query: 279 VMMN 290
+ +N
Sbjct: 215 INLN 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,394,567
Number of Sequences: 37544
Number of extensions: 266044
Number of successful extensions: 749
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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