Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A18
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    29   1.9  
AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   4.3  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   7.5  
U64857-9|AAC25863.3|  302|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...    26   10.0 

>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +3

Query: 18  YHNTSARSPFLI*KMLIFISIAVLLVGGE---AKFYKDCGSQLATVQTVMVTGCSQDARE 188
           ++N  +    L   +L F SI +L+ G E    +F+  CG Q + +     TG   DA E
Sbjct: 277 FNNFPSSKMHLFLNILAFASIGLLVNGEEWCMTQFF--CGYQHSVITYPFFTGKVADADE 334

Query: 189 CVLR-RNSNVSMNIEFTPN 242
           C  R  N+   M+ EF  N
Sbjct: 335 CKNRCLNNPACMSSEFRYN 353


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 143 RADCHGDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQ-HNHRRPRGDDEQ 292
           +A+    R +SR     A +K+  +  H  H  SR H+ H HR  RG+  +
Sbjct: 255 KAEMKRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHRE 305


>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 383 SHVLPWSWPAYRPFIPSQADLCSA 312
           S  LP+ WP+     P Q  LCSA
Sbjct: 451 SEPLPYLWPSTEHLAPRQCSLCSA 474


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -2

Query: 356 AYRPFIPSQADLCSASRKRYGPVHHHPVDVCG--YAGELLIRSEFDVHADVTVSSQHALP 183
           A R  + S       +R+  G    H  ++CG  Y+ ++ +      H +   S  HA+P
Sbjct: 39  ASRKSLKSHLKSYKYAREVAGYKSKHTCEICGAHYSSKIYLNRHMKKHLETADSGAHAIP 98

Query: 182 SV 177
           S+
Sbjct: 99  SL 100


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 197 AKKQ*RQHEHRIHSESRAHQHNHRRPRGD 283
           ++KQ +Q   + H +  +HQ+NH++  G+
Sbjct: 469 SQKQQKQSNGKSHHQHSSHQNNHQKSNGN 497


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = +2

Query: 218 HEHRIHSESRAHQHNHRRPRGDDEQAHTVSC*LSRDRLAKG*KACTLASSKAERDLHKLY 397
           H H  H       H+H   +  D  + + S   S    +    + + +SS++E + H   
Sbjct: 84  HAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHK 143

Query: 398 SHACRY 415
            HA ++
Sbjct: 144 KHAKKH 149


>U64857-9|AAC25863.3|  302|Caenorhabditis elegans Hypothetical
           protein C37C3.8a protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 221 EHRIHSESRAHQHNHRRPRGDDEQAHTV 304
           +H+I+ E RA +H     R D+E  H++
Sbjct: 109 DHKINEELRATRHFDLMDRRDEESEHSI 136


>U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical
           protein C37C3.8b protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 221 EHRIHSESRAHQHNHRRPRGDDEQAHTV 304
           +H+I+ E RA +H     R D+E  H++
Sbjct: 157 DHKINEELRATRHFDLMDRRDEESEHSI 184


>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +2

Query: 74  QYRSTFGRW*SQILQGLWVAVSHRADCHGDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAH 253
           Q+   FGR  S      WV V ++    G  VQ    G+    +Q     H +HS+  AH
Sbjct: 319 QWAEAFGRHNSGTYNNEWVVVDYKQFHRGKEVQPET-GIIHVVEQ--MPGHIVHSDKTAH 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,084,762
Number of Sequences: 27780
Number of extensions: 209446
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)