Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A18
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   1.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   2.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.7  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -3

Query: 343 SSLRKPISAQLAGNGMGLFIITPWTSVV 260
           S++ +P+  +L+   + LFI+  WT  +
Sbjct: 147 STIARPLDGKLSRGQVILFIVLIWTYTI 174


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/54 (16%), Positives = 25/54 (46%)
 Frame = +2

Query: 131 AVSHRADCHGDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEQ 292
           ++ HR     ++ +     +R  +++ R+H  R+ S+ +  Q   ++     +Q
Sbjct: 53  SIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQ 106


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 168 CSQDARECVLRRNSNVSMNI 227
           CS+ +  C+  RNS+  +NI
Sbjct: 100 CSKTSNPCLPHRNSDRDLNI 119


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +2

Query: 218 HEHRIHSESRAHQHN 262
           H H  H+ +  HQH+
Sbjct: 431 HHHHSHAATPHHQHS 445


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,209
Number of Sequences: 438
Number of extensions: 2915
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)