Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_A15
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    80   7e-17
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    80   7e-17
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    25   2.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   3.5  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    24   4.6  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   4.6  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    24   6.1  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   6.1  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    24   6.1  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    24   6.1  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    23   8.1  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 80.2 bits (189), Expect = 7e-17
 Identities = 38/72 (52%), Positives = 47/72 (65%)
 Frame = +3

Query: 87  KSGQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYGKPK 266
           ++ +YRQ+  +HRA RP+RPDKARRLGY+AKQGYVI+RI               TYGKP 
Sbjct: 26  RAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPV 85

Query: 267 SHGVNQLKPTRN 302
             GVN LK  R+
Sbjct: 86  HQGVNHLKYQRS 97


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 80.2 bits (189), Expect = 7e-17
 Identities = 38/72 (52%), Positives = 47/72 (65%)
 Frame = +3

Query: 87  KSGQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYGKPK 266
           ++ +YRQ+  +HRA RP+RPDKARRLGY+AKQGYVI+RI               TYGKP 
Sbjct: 26  RAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGQTYGKPV 85

Query: 267 SHGVNQLKPTRN 302
             GVN LK  R+
Sbjct: 86  HQGVNHLKYQRS 97


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 111 STG--DIAHSYTQEKSHNIAHFFLYTPVNLRAHLR 13
           STG  D+  ++  +K H  A+  LYTP+  R+ L+
Sbjct: 295 STGLEDLCLTFHTDKDHPEANQVLYTPIYARSTLK 329


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 157 EGLDTVPSKVMLSSESACAVVAVNAQCP 240
           E L+ +P KV++     CAV  V    P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 289 FSWLTPWLLG 260
           + WL+PWLLG
Sbjct: 194 YCWLSPWLLG 203


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 266 LGFAVGSSLGHWA 228
           LG  +GS+ GHWA
Sbjct: 299 LGLNIGSTTGHWA 311


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 134 PGSAVHTSQLAILPTLIRKRNRITSLTFS 48
           P  +VH++Q  ++PT I   +  T  TFS
Sbjct: 82  PELSVHSAQQPLIPTSIASSSAQTGDTFS 110


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 154 REGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRAMV 276
           R G  T P+KV L  E      + N Q P     +NP  MV
Sbjct: 648 RNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMV 688


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 138 WAWERGAYESTGDIAHSYTQEKSHNIAHFFLYTPVNLRAHLR 13
           WAW+R   + +GD+  S  Q       + +   PV+L + +R
Sbjct: 65  WAWQRWYIDMSGDVDESGWQYGFSFTMNNWHGKPVSLHSFVR 106


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 134 PGSAVHTSQLAILPTLIRKRNRITSLTFSYT 42
           P +A++ +  A+ PT+ +  + + + T SYT
Sbjct: 46  PSAALYLTNFAVYPTVTQYLDTVDTSTGSYT 76


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 215 TAHADSEDNITLLGTVSKPSRLV 147
           TA ADS D+ +   T+ KPS  +
Sbjct: 190 TASADSSDSSSASSTIFKPSYFI 212


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 127 LPGPRGQTRREGLDTVPSKVMLSSESACA 213
           LP P+G+ +R+G   + +K++ S E   A
Sbjct: 10  LPQPQGKHQRKGKKQLENKILHSYEEESA 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,965
Number of Sequences: 5004
Number of extensions: 22732
Number of successful extensions: 63
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)