Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_A15
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 76 7e-15
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 76 7e-15
04_04_0030 + 22279716-22280052,22280644-22281144,22281369-222816... 30 0.44
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 29 0.58
04_03_0563 - 17195605-17196681 29 0.58
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 0.77
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 28 1.8
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 27 2.3
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 27 2.3
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203... 27 2.3
05_03_0591 + 15892772-15893412,15893478-15893910 27 3.1
01_05_0293 - 20532559-20532572,20532573-20532798,20532926-205339... 27 3.1
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469... 27 4.1
12_02_0536 - 20121381-20121974,20122000-20122201,20122300-201224... 27 4.1
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 27 4.1
02_05_0607 - 30315982-30316215,30316688-30316831,30316902-303169... 27 4.1
02_02_0151 - 7220335-7220819,7220933-7223507 27 4.1
08_01_1005 - 10183796-10185183,10186673-10186859 26 5.4
08_01_0413 - 3679887-3681254 26 5.4
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 26 5.4
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 26 5.4
03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669 26 7.2
11_04_0276 + 15691909-15691968,15692070-15692132,15692246-156923... 25 9.5
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 75.8 bits (178), Expect = 7e-15
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = +3
Query: 96 QYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHG 275
+YRQ + R RPTRPDKARRLGY+AKQGYV++R+ YGKPK G
Sbjct: 134 EYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKHQG 193
Query: 276 VNQLKPTRNLQS 311
+ QLK RN +S
Sbjct: 194 ITQLKFQRNKRS 205
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 75.8 bits (178), Expect = 7e-15
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = +3
Query: 96 QYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHG 275
+YRQ + R RPTRPDKARRLGY+AKQGYV++R+ YGKPK G
Sbjct: 29 EYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKHQG 88
Query: 276 VNQLKPTRNLQS 311
+ QLK RN +S
Sbjct: 89 ITQLKFQRNKRS 100
>04_04_0030 +
22279716-22280052,22280644-22281144,22281369-22281692,
22281860-22281945,22282105-22282517,22282612-22282878,
22282977-22283730
Length = 893
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 74 FSCV*EWAISPVDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPRAPWWP 223
+S + W + V +Y P +A +A ++W + + APWWP
Sbjct: 673 WSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWP 722
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 62 MLCDFSCV*EWAISPVDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPRAPWW 220
M C +S + W+ + V +Y P +A +A ++W + + APWW
Sbjct: 216 MGCLWSAISRWSEAYVAAYYPSDKAVQADYELQSWYAEAVQSRHADKRDAPWW 268
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 115 VCTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAV 225
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 0.77
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 299 ASGFQLVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 138
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 284 LVDTMALGFAVGSSLGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 135
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 281 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 123
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 27.5 bits (58), Expect = 2.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -3
Query: 281 VDTMALGFAVGSSLGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 123
V M G G S+G + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
>02_01_0304 +
2037718-2037939,2038169-2038384,2038862-2039329,
2039419-2040171
Length = 552
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 230 AFTATTAHADSEDNITLLGTVSKPSRLVWPRGPGSAVHTSQLAILPTLIRKRNRI 66
A A+ +HA+S + G KPS P + TS +A+L + ++ N++
Sbjct: 440 ATEASASHAESRTKVKPSGKSLKPSEAATQLLPEQKMPTSSMAMLSSERKENNKL 494
>05_03_0591 + 15892772-15893412,15893478-15893910
Length = 357
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 104 PVDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPRAP 214
P+D R+ H A +G W P + + Q PR P
Sbjct: 108 PIDCRHGRALFHSAGEGLAVWDPMAGDVRWQQEPRIP 144
>01_05_0293 -
20532559-20532572,20532573-20532798,20532926-20533960,
20534670-20534996
Length = 533
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 105 QLTRMHRAPRPTRPD 149
QLTR+H P P RPD
Sbjct: 73 QLTRLHPPPEPPRPD 87
>12_02_0725 -
22545423-22546251,22546352-22546547,22546791-22546973,
22547076-22547275,22548030-22548133
Length = 503
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 147 LASWAWERGAYESTGDIAHSYTQEKSHNI 61
L +W WE+G+ + G++ S SH +
Sbjct: 74 LLTWKWEKGSLRNRGELLRSEPLALSHPV 102
>12_02_0536 -
20121381-20121974,20122000-20122201,20122300-20122495,
20122746-20122928,20123031-20123187
Length = 443
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 147 LASWAWERGAYESTGDIAHSYTQEKSHNI 61
L +W WE+G+ + G++ S SH +
Sbjct: 25 LLTWKWEKGSLRNRGELLRSEPLALSHPV 53
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +3
Query: 171 RAKQGYVIFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRN 302
R+ GYV+ Y KPK G+ QLK RN
Sbjct: 249 RSGTGYVVLPCPSRRGGRKRPVHKGIVYSKPKHQGITQLKFQRN 292
>02_05_0607 -
30315982-30316215,30316688-30316831,30316902-30316989,
30317829-30317934,30318398-30318552,30318630-30318699,
30319940-30320106,30320827-30320894,30322764-30322867,
30322937-30323107,30323113-30323238,30323496-30323663,
30323725-30323908,30324139-30324534
Length = 726
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 93 GQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYVIFR 200
G+Y +L + RP RPD+A A+ Y +FR
Sbjct: 558 GRYAELNAADQ--RPLRPDEAELFEKSAQNAYALFR 591
>02_02_0151 - 7220335-7220819,7220933-7223507
Length = 1019
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 150 CLASWAWERGAYESTGDIAHSYTQEKSHNIAHF 52
CLA WAW R Y++ G++ H E + A F
Sbjct: 896 CLAEWAWRR--YKAGGEL-HDVVDEAIQDRAAF 925
>08_01_1005 - 10183796-10185183,10186673-10186859
Length = 524
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +3
Query: 48 GKSERCYAISLAYKSGQY 101
GKSERCY SLAY G +
Sbjct: 247 GKSERCY-YSLAYGDGSF 263
>08_01_0413 - 3679887-3681254
Length = 455
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +1
Query: 121 TALPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRA 270
++ P PRG+ RR+ PS + A Q P P AN A
Sbjct: 355 SSAPRPRGRGRRQARQDAPSAPATQQQVVNADAGSGNQAPLPPPDANGAA 404
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 133 GPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQC 237
GP +T +GL P+ +++ ++ A +NA C
Sbjct: 120 GPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVC 154
>01_03_0260 -
14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 191 NITLLGTVSKPSRLVW 144
N+TL T S PSRL+W
Sbjct: 265 NVTLYATASWPSRLMW 280
>03_02_0709 + 10583621-10583626,10583711-10584712,10585304-10585669
Length = 457
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 136 PRGQTRREGLDTVPSKVMLSSESACAVVAVNAQC-PRELPTA 258
P+GQ R + L S+ M S C + + QC P+E A
Sbjct: 318 PQGQARPQRLRVRASQAMEISHPNCLIFVMGNQCSPKEAAAA 359
>11_04_0276 +
15691909-15691968,15692070-15692132,15692246-15692371,
15692515-15692613,15692948-15693020,15693634-15693719,
15694993-15695076,15695312-15695371,15695570-15695758
Length = 279
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 311 RLQVASGFQLVDTMALGFAVGSSLGHWAFTA 219
R Q+A+ A+G AVG+SLGH T+
Sbjct: 210 RSQIATIALATHKNAIGVAVGASLGHTVCTS 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,066,209
Number of Sequences: 37544
Number of extensions: 171426
Number of successful extensions: 542
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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